Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00734 ATGGCAAGAAAGAAGGTGAAACTTGCATACATAACTTGTCACTCGAAGAGGAGGGAAACATTCAAAAAAAGAAAAAATGGTCTAATAAAAAAGGTTAGTGAAATCAGCACCCTTTGTGGAATAGAAGCATGTGCAATAATTTATGATAAAAACAATACTCAAGTAGAGGTTTGGCCTTCGGAGTCAGAAATCAAAAGTGTGTTGTCAAGATTTATGAGTTTTCCTGAAATGGAACGAAGTAAAAAGATGTTGGATCAAGAGGGTTTCTTGAGGCAAACCATAGCCAAAGTGTATGAGCAGTTGAAGAAACAAATAGAGGAAACTAGGAAGAAGGAAATGACAAATCTTATTGGTCAATATATTCATACCGGGGAATTTAATGGCTATTTAATGAGCAAGAATGATCTCAATGATTTCTCATCCTTTATTGATGAGAGTTTGAAGACAATCGAACAAAAGATGTCACAAATGGCAATTATAGGCGAAGAGGACATTGGAAATGGAGTTCAATCAATGAATGCAATAGAGGGGCAGGAAAATATAGGTCATGCCCTATTAAGGTTGGTTAGTGGAGGAGAGGATCAACAAGAAAACATGGGTCATGTAGCCCAAGGACTAGAGACCAACATATGTGAAGATTTGCAAATTAATTATGGGCAATGGCCTATGGATTTCCCCATGCTACCATTTTCATATGATAGTGTTGACCCAAATGGTTTTTAG 723 0.3679 MARKKVKLAYITCHSKRRETFKKRKNGLIKKVSEISTLCGIEACAIIYDKNNTQVEVWPSESEIKSVLSRFMSFPEMERSKKMLDQEGFLRQTIAKVYEQLKKQIEETRKKEMTNLIGQYIHTGEFNGYLMSKNDLNDFSSFIDESLKTIEQKMSQMAIIGEEDIGNGVQSMNAIEGQENIGHALLRLVSGGEDQQENMGHVAQGLETNICEDLQINYGQWPMDFPMLPFSYDSVDPNGF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00734 240 Coils Coil 91 111 - -
Car05g00734 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car05g00734 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car05g00734 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car05g00734 240 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Car05g00734 240 PANTHER MADS BOX PROTEIN 2 170 - -
Car05g00734 240 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Car05g00734 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Car05g00734 240 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car05g00734 240 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Car05g00734 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 170 - -
Car05g00734 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00734 Car-Chr5 41517312 41518412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00734 1 154 Type I MADS-box Gene Family AT5G48670 50.649 6.20e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car05g00734 SRF-TF 4.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00734 - - cam:101496969 483.796