Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00728 ATGTATCCTCAACAACAACAACCTTATTATTTAACAAACCCTTACTTGTTAAATCCATCTTTCCCTGTCACTTCAGATTCTTCACTTCATCCTCCTGGAACTGACCCACCTTCAAATTCAACCCCTTTTCCTGCTTCTTCTATTTATGCCTCTCAAACTGCTGATTATCAGAATTGGATCGCTCAACCCATCGGATATGATCTTGCTGTTGGTTCATCACATGAGACTTCAGCAGCAACGTCTGCGAGTTTGCCTACAGCATTGAATGCTACATGGCCACATCAAATTTATCCCAATGATACAACAACAACGACAATATTGCCGAACCAAGCACAAGTCACCAAAGCTTTGAGATGTGAAGTGTGTAAAATCGACGTCAATAGCAAAGATGTTTATGAAAAGCACATAACTGGAAAGAAACACAAGAAGAATTTGCAGGCACAAAGTCAAGAAAGTAGTGGCGCACTCGTTGATTCTGCAAAGGTTTGCTCAGTATGCAATGTTGTGTGCACTAGTCAAGACGCATATAACAAACATCTTTTTGGGAAAAAGCACACTGCTCAGGTTGCCTTGATGTCTAACAATGGCATTGGTCCATGTATTGCGGAATTCAAGCGTCGCGGTATCGGTCCTTGGGAAAAAGCCACTAAGAAAATCAAGGTTGCTCAATCTGCATGGTGTGAAGTTTGTAAGATTAATTGTAACAGCAGGGATATGTACATTGTTCACTTAGCCGGGAAGAAACACTTGAAGAACCTGGAGAAACTGTCAAATCCAAAAATCAACGTTGGCACCGAAGCCGCCGCCGCTGCAAATACTTTAATTGGGCCACAGGAAAAGCCAGATACCAATAAACCGAAACCGAAGAAGGCACCTGAACTAGATATCGAGACGAAGAAACGTAAAGTTGTGGAAGGAGGGGCTGCGGCAAATGCTATCAAAATGTGCACTTTATGCAATGTAGTGTGTAACAGTGAAACAGTTTTCAATACTCATCTTAGTGGACAAAAACATGCAGCTATGGTGAAGAAGGCAGGATCAAGCACTGGTTGA 1053 0.4207 MYPQQQQPYYLTNPYLLNPSFPVTSDSSLHPPGTDPPSNSTPFPASSIYASQTADYQNWIAQPIGYDLAVGSSHETSAATSASLPTALNATWPHQIYPNDTTTTTILPNQAQVTKALRCEVCKIDVNSKDVYEKHITGKKHKKNLQAQSQESSGALVDSAKVCSVCNVVCTSQDAYNKHLFGKKHTAQVALMSNNGIGPCIAEFKRRGIGPWEKATKKIKVAQSAWCEVCKINCNSRDMYIVHLAGKKHLKNLEKLSNPKINVGTEAAAAANTLIGPQEKPDTNKPKPKKAPELDIETKKRKVVEGGAAANAIKMCTLCNVVCNSETVFNTHLSGQKHAAMVKKAGSSTG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00728 350 PANTHER - 16 150 - -
Car05g00728 350 PANTHER - 188 347 - -
Car05g00728 350 PANTHER - 153 193 - -
Car05g00728 350 SUPERFAMILY beta-beta-alpha zinc fingers 312 344 IPR036236 -
Car05g00728 350 SUPERFAMILY beta-beta-alpha zinc fingers 156 192 IPR036236 -
Car05g00728 350 SMART c2h2final6 117 141 IPR013087 -
Car05g00728 350 SMART c2h2final6 314 338 IPR013087 -
Car05g00728 350 SMART c2h2final6 161 185 IPR013087 -
Car05g00728 350 SMART c2h2final6 225 249 IPR013087 -
Car05g00728 350 SUPERFAMILY beta-beta-alpha zinc fingers 107 150 IPR036236 -
Car05g00728 350 SUPERFAMILY beta-beta-alpha zinc fingers 223 256 IPR036236 -
Car05g00728 350 Pfam Zinc-finger of C2H2 type 118 141 - -
Car05g00728 350 Pfam Zinc-finger of C2H2 type 162 185 - -
Car05g00728 350 Pfam Zinc-finger of C2H2 type 316 338 - -
Car05g00728 350 Pfam Zinc-finger of C2H2 type 226 249 - -
Car05g00728 350 MobiDBLite consensus disorder prediction 273 295 - -
Car05g00728 350 Gene3D Classic Zinc Finger 213 258 - -
Car05g00728 350 PANTHER ZINC FINGER RNA-BINDING PROTEIN 153 193 - -
Car05g00728 350 PANTHER ZINC FINGER RNA-BINDING PROTEIN 16 150 - -
Car05g00728 350 PANTHER ZINC FINGER RNA-BINDING PROTEIN 188 347 - -
Car05g00728 350 SMART ZnF_U1_5 311 345 IPR003604 GO:0003676|GO:0008270
Car05g00728 350 SMART ZnF_U1_5 222 256 IPR003604 GO:0003676|GO:0008270
Car05g00728 350 SMART ZnF_U1_5 158 192 IPR003604 GO:0003676|GO:0008270
Car05g00728 350 SMART ZnF_U1_5 114 148 IPR003604 GO:0003676|GO:0008270
Car05g00728 350 MobiDBLite consensus disorder prediction 22 46 - -
Car05g00728 350 Gene3D Classic Zinc Finger 291 345 - -
Car05g00728 350 Gene3D Classic Zinc Finger 149 192 - -
Car05g00728 350 Gene3D Classic Zinc Finger 100 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00728 Car-Chr5 41357099 41362620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00728 125 345 C2H2 Transcription Factor Family AT5G61190 32.579 2.55e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car05g00728 zf-met 7.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00728 - - cam:101495339 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00728 05 41357099 41362620 Car05g00728 05 41357099 41362620 ECH