Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00727 ATGGAATTTGAAAAAGATCAAGAAGTGATTACACACGTTTGCAAATTCTGCAGCAAGAGTTTTTCTTGTGGTAGATCATTAGGGGGTCACATGAGGTGTCatcatgatcatgtaaaaatcaatgatcatgatcatgatcatgatGAGATTGATGCTGCAACAACAACAAAAGTGAAGAAAGAAGAAGGTTGTTGTTCAGAAGGGTATTATGGTCTAAGAGAAAATCCAAAGAAAACTTGGAGAGTACTAACTGATTCAAGTAATGATCATGAACAAGACCCTTTTATTGTTGATGTTGTTTTGGACAAGTTGTGTGAAAAATGTGGTAAAGGTTTTCAATCTTGGAAAGCATTGTTTGGTCACATGAAGTGTCATTCAGAAAAAGAAAGAGTTTCTTCATCTTCAAAGAAGAATAAGAATATTAGTTTTGAATTGGATGAACAAGAGGATTCATCTTGTGTTCAGAAGAAAATGGTTTTGGATAGTGTATCTGATGATAATGAAGCAACTGTTCCAAATAGAAGGAGAAGATCAAAGAGAAAATTGAGAACAAGGTACATGAATATGAAtagtagtagtagtagtagtTCTTGTTTTGTTGAAAATTCTGTTTGTGAAATTGATGAACATGAACAAAAAGAGGTTGCTATGAGTTTGATGATGCTTAGTAGAGATGTAAGATCTTGGTGTGGTCTCAATTCAATTGCTGAATCTTCTGATAATAATAACAATAACTCTTTGGAATTAGAAGCTCCATTAACTCATTTAGTTTCTAAGATTGAAGGAAAAAAAAGGGTCATCACCAATGGTTCTGAAATTGTGAAAATGACCAAAAAAGAAAAGAATTTTGAGTTTGGTAATCTAAACTCCAAAGGGAAAAAAAGTTCAGAACTCTTTGTTACTATGAAGAAAACCAAAGTTTCTGATATCGAGAACGGAaaggataaaaagaagaataagaagaagaagaTTGAGGTTCAGGTTGATTCTGATTCAGCGTTTGAGGTCAATGCGAAATCAAAATCAGGTAACACTACTACAAAGTACACTTCAATGAAGGAAAAGTTCTTTGATTGTGAATTGAGCAAGAAAAAACCTCATAAAAGAGGAAAATTTGAGTGTACTACTTGCAACAAAATTTTCAATTCATACCAAGCACTTGGAGGTCATAGAGCTAGTCATAAGAAGAACAAAGGTTGCTATTTTGCTTCAAAAAAAATTCATAGTAGTGAAAATGAAAACATTGCTGAATTAGAACTAGAAATGAAGAACAATCTTGCTGCTGCTGATGAAAGAAGAATGTTACAAAGTGAAATTCATGAAGAAGCTCCAGAAATAAGGGATTTTCTTGATCTTAATGTTCCTGCAGAGGCTACTGATGAAGAAAAAAGGGGTCATGGTGAGGCTTGTTACAAACCATGGTGGTTTGTTGGAAGCAATCTTAAGCAAGAGGCAATGGTATAG 1464 0.319 MEFEKDQEVITHVCKFCSKSFSCGRSLGGHMRCHHDHVKINDHDHDHDEIDAATTTKVKKEEGCCSEGYYGLRENPKKTWRVLTDSSNDHEQDPFIVDVVLDKLCEKCGKGFQSWKALFGHMKCHSEKERVSSSSKKNKNISFELDEQEDSSCVQKKMVLDSVSDDNEATVPNRRRRSKRKLRTRYMNMNSSSSSSSCFVENSVCEIDEHEQKEVAMSLMMLSRDVRSWCGLNSIAESSDNNNNNSLELEAPLTHLVSKIEGKKRVITNGSEIVKMTKKEKNFEFGNLNSKGKKSSELFVTMKKTKVSDIENGKDKKKNKKKKIEVQVDSDSAFEVNAKSKSGNTTTKYTSMKEKFFDCELSKKKPHKRGKFECTTCNKIFNSYQALGGHRASHKKNKGCYFASKKIHSSENENIAELELEMKNNLAAADERRMLQSEIHEEAPEIRDFLDLNVPAEATDEEKRGHGEACYKPWWFVGSNLKQEAMV 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00727 487 ProSitePatterns Zinc finger C2H2 type domain signature. 374 394 IPR013087 -
Car05g00727 487 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Car05g00727 487 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Car05g00727 487 SMART c2h2final6 12 34 IPR013087 -
Car05g00727 487 SMART c2h2final6 372 394 IPR013087 -
Car05g00727 487 SMART c2h2final6 103 125 IPR013087 -
Car05g00727 487 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 421 - -
Car05g00727 487 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 422 487 - -
Car05g00727 487 SUPERFAMILY beta-beta-alpha zinc fingers 104 394 IPR036236 -
Car05g00727 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Car05g00727 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 40 IPR013087 -
Car05g00727 487 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 421 - -
Car05g00727 487 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 422 487 - -
Car05g00727 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 372 399 IPR013087 -
Car05g00727 487 Pfam C2H2-type zinc finger 105 127 - -
Car05g00727 487 Pfam C2H2-type zinc finger 12 36 - -
Car05g00727 487 Pfam C2H2-type zinc finger 372 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00727 Car-Chr5 41347619 41349510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00727 13 243 C2H2 Transcription Factor Family AT1G26610 39.837 3.16e-32 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car05g00727 zf-C2H2_6 4.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00727 - - cam:101495666 913.294