Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00724 ATGGAACTGACAGAAGAACAGAGAAAACAAATGGAAGCAAATCGCTTAGCTGCAATCGCAAAACGAAAAGCCTTCTTAGAATCTCAGCAACCTCAACGAAACCCTTGGCACCTTTTCAAATGCCAAAAATTCTCTCAACCCTCTCAACCCAAACCCAACACTAAATTCCTCGCAAGACTTGAAATATGTTCTCATGATTCTTTCTCAATTACTCCTCTCCCTCTCCCCAATTTCCCTTTTCCAACCCTAGATACTTGCTTCCAAATTATCAACGACATTATCTCCCAAATGAATGTGGATCCATCGCATTTTACTCAGACAAGCATGGGCGGAAAAGCTTGTGTGTTTAAGTTGACGGACTATAGAACCGTTTTGAAGCTGTTAAAGGCAGAGATTGAGGTGGAGGAGATTCCTTGGGTGACTTTCAATGTCGTCGATACGCTTTCGCATTTGGAGGGGAGGTGGAATCCGGTGAGGCCAGAGCATTTGAGTGATGATGAGGTTGATGGTTTGATTGGGAAGTTGCCTAACAGATTAATTGATGTGTTGTTGCCGTTTCAAATGGATGGTTTAAGGTTTGCACTTAGAAGAGGTGCTCGATGTCTTATTGCCGATGAAATGGGACTTGGAAAGACTCTTCAGGCTATTGCTATTGCAGGATGTTTTGTTGACGAAGGATCTATACTTGTTGTTTGCCCTGCTGTTTTGCGGTATTCGTGGGCTGAAGAACTGGAGCGGTGGCTTCCTTTCTGCTTGCCAGCTGATATCCATCTTGTTTTTGGCCATCAAGACAATCCTGTAAATCTAAAAAGATGCCCCAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAGCTTAAGTGGGCTCTTTTGATTGTTGATGAATCTCATCATGTACGCTGTACAAAGAAAACCGAAGAACCAGGAGAGATAAGGGCTGTTCTTGATGTGGCTTTGGAAGTCGAGCGTATCATTCTGCTATCAGGGACACCTTCTTTGTCAAGGTTGCCAGGTTTGCTGGGGAAGACTAAATATGAGTTTGCAAAAACTTATTGTGATCTCAAATATATCAAGGGTTTCCAAGGAAAATATTTTGCGGATTATTCGAAGGGTGTCCGCTTGGAGGAATTGAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGGCTCAAGCAACATGTGTTACAACAGTTACCTCCAAAACGCCGGCAAATTATAAGACTGTCATTGAAAAGATCAGATATAGTTGCTGCGAAAACTGCTGTTGGGGTattgaagattgatgtatctgaaaatggaattgaagatATGCCGTTGGATAATTTGGATGAACATGATGGAAAGCTTACTTATCAGGAACTTGGAATTGCAAAGCTATCTGGGTTTTGTGAATGGCTTTCCTTTCATCCACTCATTGCGGGATTAGAGAATGCTTCAAAGATGATAATTTTTGCTCATCATCACAAAGTTCTTGACGGAGTACAGGAGTTTATATGTGAGAAAGGAGTAGGTTTTGTGCGAATAGATGGACATACACTACCCCGAGATAGACAATCTGCAGTAATCTCATTTCGATCATCACCAGAGGTTAAAATTGCGATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCGACAGCACAGGATGTTGTGTTTTTGGAGCTACCTCAGAGCCCAACGACGATGCTTCAGGCCGAGGACAGAGCTCATCGACGGGGTCAAACAAATGCAGTTAACATATACATATTTTGTGCAAAGGATACTTGGGATGAATCGCATTGGAAAAGTTTGAATAAAAGTTTGCATCGTGTTTCATGTACAACAGATGGAAAATATGACTCGATGAAAGAGATAAAGGTTGAAGGTGTTTCTTATATAGACCCAACCTTGAAAATTGACAGATCTGAAGAACAATCTGCATGCAAAGATGCATCAGATGAAACAGAATTGGATAAGCAACCCTCTGCATTTAAATCAAATGAACCAGAAGCAAATCAAGATGATGAATCTGGTCTTGTAGATAACACAAATCAGGGTGCTAATATTACGGTTGATAGTGTTTCCTGCCTAGATTTAGGCAAGATTTCAGTTTTGGATGAAAATCTTGATGTAGATGATTTTAATGGTGGGGATAGATGTTCTGAAGAGAGTTTCGAGGACAACGATGAAGTAATAGAGGATAAGGAATCAACTTCAACGACAGATGCAGTAAATGGCCAGCCCATTCATCCTGTTGAAACTGAAGGAGATTGCCCTAATCAAGTCAATTCTCTTCGATTTGAGGTGAGTCCATACACTGGAAGGATCCACCTTTATACTTGCAATCCGGGCACAGATGTAAGACCACAGCCACTTTATGAAAGTTTTCGACCAGAAGACCTTGAGTTGCTGAGTCCTTCTGATGCTGATGAGAAATGGGATATAGAGTCTGCATCTGTCAAGGATAACCCTGCTTATAGGAATGCTCTTCTGGATTTTGCAAATGAATGGAAGAATTTAAGGTCAATTGAACGCAGGAAGTTACTTGGAAAACCGTTACAACTTCCTTTGGCTGTTGAATTATGCTACTTGAGTGAAAGTAATAACCACAACAGTAAGGGATTAATAAATGGTGGAAGCAAACGGCGCATGACTCCTTTAACGGAGATTAGCTATACTTTACCATCAGATGCTGTTTGGAAAAAGGTTTATCTTCGAAGTGGCCTTGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGTCTGAAAGATGAGCCACTTTGTAAGCTTTGTCAAAAGCAGTGCATGGGTAATAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGTAACCTTGACTGCTATCAAGAGTATCGTATGAGAACTAGCAGCCGATTCCTTCGTCAGGAACTTTTCCAAATTGAGCAAGGTGTGTGCACAAATTGCCAATTAGACTGTCATAAGCTTGTTGTGCATATAAGACCTTTGTCCTTGGAAAGACGACAGGGGTACATTGAAAAAGTAGCACCAAAAATTGCAAAGCGGAAGAAGATGCTTGAGAAGCTTGTCAACGACCCAAGTGAAGGCAATGCATGGCATGCTGATCACATTGTTCCAGTATATAAAGGCGGAG 3142 0.4074 MELTEEQRKQMEANRLAAIAKRKAFLESQQPQRNPWHLFKCQKFSQPSQPKPNTKFLARLEICSHDSFSITPLPLPNFPFPTLDTCFQIINDIISQMNVDPSHFTQTSMGGKACVFKLTDYRTVLKLLKAEIEVEEIPWVTFNVVDTLSHLEGRWNPVRPEHLSDDEVDGLIGKLPNRLIDVLLPFQMDGLRFALRRGARCLIADEMGLGKTLQAIAIAGCFVDEGSILVVCPAVLRYSWAEELERWLPFCLPADIHLVFGHQDNPVNLKRCPRVVVISYTMLHRLRKSMLELKWALLIVDESHHVRCTKKTEEPGEIRAVLDVALEVERIILLSGTPSLSRLPGLLGKTKYEFAKTYCDLKYIKGFQGKYFADYSKGVRLEELNVLLKQTVMIRRLKQHVLQQLPPKRRQIIRLSLKRSDIVAAKTAVGVLKIDVSENGIEDMPLDNLDEHDGKLTYQELGIAKLSGFCEWLSFHPLIAGLENASKMIIFAHHHKVLDGVQEFICEKGVGFVRIDGHTLPRDRQSAVISFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQSPTTMLQAEDRAHRRGQTNAVNIYIFCAKDTWDESHWKSLNKSLHRVSCTTDGKYDSMKEIKVEGVSYIDPTLKIDRSEEQSACKDASDETELDKQPSAFKSNEPEANQDDESGLVDNTNQGANITVDSVSCLDLGKISVLDENLDVDDFNGGDRCSEESFEDNDEVIEDKESTSTTDAVNGQPIHPVETEGDCPNQVNSLRFEVSPYTGRIHLYTCNPGTDVRPQPLYESFRPEDLELLSPSDADEKWDIESASVKDNPAYRNALLDFANEWKNLRSIERRKLLGKPLQLPLAVELCYLSESNNHNSKGLINGGSKRRMTPLTEISYTLPSDAVWKKVYLRSGLGKKEKEYTQGWSLKDEPLCKLCQKQCMGNNAKTPEYFEDLFCNLDCYQEYRMRTSSRFLRQELFQIEQGVCTNCQLDCHKLVVHIRPLSLERRQGYIEKVAPKIAKRKKMLEKLVNDPSEGNAWHADHIVPVYKGG 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00724 1047 Gene3D - 418 678 IPR027417 -
Car05g00724 1047 SMART ultradead3 179 364 IPR014001 -
Car05g00724 1047 MobiDBLite consensus disorder prediction 719 762 - -
Car05g00724 1047 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 356 IPR014001 -
Car05g00724 1047 Pfam SNF2-related domain 200 421 IPR000330 GO:0005524|GO:0140658
Car05g00724 1047 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1047 - -
Car05g00724 1047 Coils Coil 1 21 - -
Car05g00724 1047 MobiDBLite consensus disorder prediction 645 687 - -
Car05g00724 1047 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 477 628 IPR001650 -
Car05g00724 1047 Gene3D - 170 417 IPR038718 -
Car05g00724 1047 Pfam Helicase conserved C-terminal domain 483 582 IPR001650 -
Car05g00724 1047 CDD SF2_C_SNF 478 593 - -
Car05g00724 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 396 IPR027417 -
Car05g00724 1047 SMART helicmild6 499 582 IPR001650 -
Car05g00724 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 632 IPR027417 -
Car05g00724 1047 MobiDBLite consensus disorder prediction 645 665 - -
Car05g00724 1047 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1047 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00724 Car-Chr5 40780020 40807201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00724 479 600 RAD5 or RAD16-like Gene Family AT1G11100 36.290 2.73e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car05g00724 SNF2_N 4.6e-24 CL0023