Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00720 ATGTCAGAACAGAAAATTGATTCATGGAGCTACATGTTGATCTGTTTTTTGATCCTTTTCTCAGGTAAAGTAGTTATTGGAGATTCATTGGAAACAGACAAACAAGTATTGTTGAAGTTGAAATCCTATTTGGAAAATCAAACATTTGCAAATAGAGGAGAGTATATAAGATGGAACAACAACAACAATAATTCAAATCCATGTGAGTGGTCAGGAATATCTTGCAGCTTAATCAAAGGTAAAAAATGGAGGGTTGTGAGTGTAGACATCTCAGCAAGTGAAATATCAGGTAAAATGTTTCAGAATTTCTCTCAGCTTAGTGAACTCACATACCTTGATGTCTCTTTGAACACTCTCTCAGGTGAGATTCCTGAAGATTTAAGTAACTGTCATAAGCTTGTGTATCTAAATTTATCTCATAATATTCTTGAAGGAGAGATGAATTTGATTGGTTTGAAAAAGTTGCAAACATTGGATTTATCTATGAATAGAATTCAAGGGGAGATTGAGTTGAATTTTGTTGATAATTGTGATAGTTTGGTTACTTTGAATGTTTCAGATAATCATTTTTTTGGTAAGATTGATAAGTGTTTTGATAAGTGTCTAAAATTGAAGTACTTGGATTTGAGCACAAATAATCTAAGTGGTGGAATTTGGAATGGAATTTCAAGGTTGAAACAGTTTTCCATTTCTGAGAATCATCTTAGTGGGATTGTTCCTTCACAAGCTTTTTTAAAGAATTGTAGTCTTGAAAAATTGGATATTTCAGTTAATGGATTTGTTGGTAAACCACCTAAGGAGGTTGCAAATTGCAAGAATTTGAAGATTCTCAATCTTTCTAGTAACAATTTTAGTGAGGAAATACCTCATGAAATTGGTTCAATTTCTGGTCTACAATCATTGTTCTTGCAAAATAACAGTTTCTCAAGAGATATTCCAGATACACTTTTGAATTTGAACAATTTGTTTATCTTGGATTTGAGCAGGAACAAATTTGGTGGTGAGGTACAAGAGATATTTGGTAAATTCAAGCAATTGAAGATTCTTCTGTTGCATGCAAATTCTTACACTAAAGGGTTGAATACATCAGGAATATTTTCATTGAGTAACCTTACAAGATTAGATTTAAGCTTCAACAACTTTTCAGGTCAATTACCTGTTGAAATTTCTCAAATGACTGGTCTCACATTCTTAACATTAGGCAACAATCTATTCAATGGAACTATTCCATTTGAATTAGGAAAGTTGATTAATTTGCAAGGACTTGACCTTGGTTTCAATAGTTTTATTGGAAAAATACCACCAAATTTTGGAAACTTGAACTCTCTCTTGTGGTTAATGCTAGCTGATAACTCATTAACAGGTGAAATTCCAAAAGAGTTAGGTAACTGTTCAAGTTTGTTATGGTTGAACCTTGCAAACAACAAACTCACTGGAAAGTTTCCTTCTGAATTGACCAAAATTGGAAGAAATGCTATGAAAACATTTGAATCAAATAGAAAAAATACCTATGGTGTTATTGCGGGAAATAGCGAATGTTTATCGATGAAAAGATGGATACCTGCTGATTACCCTCCATTTAGTTTTGTGTATAGTATCTTAACAAGGAAAAATTGTAGAACACTTTGGGATAGATTGCTTAAAGGATATGGAATTTTTCCTATGTGTACATTTGATCCTTCTACTAAATCATCTCATAAATTTGGTTATGTTCAATTAAGTGGTAATCAAATTAGTGGTGAAATTCCTTCAGAAATTGGTAGCATGATGAATTTCAGTATGTTACATTTAGGTGACAACAAATTCATTGGAAAATTTCCACTTGAGATTAGTGGTTTACCACTTATAGTATTGAACATGACTAGGAACAAATTTTCAGGTGAAATTCCAAGTGAAATTGGTAACATGAAGTGTATGCAGAATCTTGATTTATCTTGGAACAATTTCTCAGGTGAATTTCCAACAAGTTTGGTTAATTTGGATGAACTTAGCAGGTTCAACATTTCATATAATCCTTTATTATCTGGTAAAGTACCACCAAGTGGACACTTGCTTACTTTTGACAAAGATTCCTATGTTGGTGACAATCTTTTAGACTTTCCAAAATTCTTTGATAACACTTTAGATCAAAGAAATAAAACTTTTCACAACAAACACATGAAAAAATCCACAATATGGTATCTTTGTGTTGCTTTGACACTTTCTATTTTAGTCTCTGGACTTCTCTTTCTAACAGTTTATTTCTTAGTGAAAAGTCCATCTTTGGAAAAAAGAAAAAACCAAGGGCATGATGATTCTGTCAAGATATTCAACTTGATCAACAACACAATTTTCACACATGCTGACATATTGAAAGCAACAGGAAACTTCAAAGAGGAAAGAATCATAGGAAAAGGAGGATTCGGAACGGTCTACAAGGGAGTTTTTCCTGATGGAAGAGAAGTGGCAATTAAGAAGCTACAAAGGGAAGAAGGAATGGAAGGCGAAAAAGAATTTCGTGCCGAAATGAAAGTCCTTGTTAGTGGTCAAGAATTTGGTTGGCCACATCCAAACCTTGTTACACTTTATGGTTGGTGTCTATATGGTTCACAAAGAATACTGGTTTATGAGTACATAGGAGGTGGAAATTTAGAAGAACTAGTGACTGATACAACAAATTTCAAGTATATAAGGCGGTTAGAAGTTGCGATCGATGTTGCTAAAGCATTAGTTTATCTACACCATGAATGTTACCCTCCAATTGTACATAGAGATGTGAAGGCTAGTAATGTTTTGCTAGATAAAGATGGTAAAGCTAAAGTAACTGATTTTGGACTTGCTAGAGTTTTTGATGTTGGAGATACTCATGTTAGTACAATTGTGGCTGGAACTGTTGGATATGTTGCGCCGGAATATGGACAAACATGGCGCGCTACGACGAAAGGTGATGTGTATAGTTTTGGTGTGTTGATTATGGAGTTAGCAACTGGGAGAAGAGCTGTGGATGGAAGTGAAGAATGTTTGGTTGAATGTGTTAGTAGAAAAGGATTGAATTATTTTGGATTAGTTGGTGATGCAAAGGAGATGTTTGAGTTGCTTCAAGTTGGTGTGAAGTGCACAAATGATTCACCACAAGAAAGGCCTAATATGAAAGAGGTTCTAGCTATGTTGATTAAGATATATAACTCTTATACTAATTTGAATTATGGACACTTTGTTTAG 3201 0.3368 MSEQKIDSWSYMLICFLILFSGKVVIGDSLETDKQVLLKLKSYLENQTFANRGEYIRWNNNNNNSNPCEWSGISCSLIKGKKWRVVSVDISASEISGKMFQNFSQLSELTYLDVSLNTLSGEIPEDLSNCHKLVYLNLSHNILEGEMNLIGLKKLQTLDLSMNRIQGEIELNFVDNCDSLVTLNVSDNHFFGKIDKCFDKCLKLKYLDLSTNNLSGGIWNGISRLKQFSISENHLSGIVPSQAFLKNCSLEKLDISVNGFVGKPPKEVANCKNLKILNLSSNNFSEEIPHEIGSISGLQSLFLQNNSFSRDIPDTLLNLNNLFILDLSRNKFGGEVQEIFGKFKQLKILLLHANSYTKGLNTSGIFSLSNLTRLDLSFNNFSGQLPVEISQMTGLTFLTLGNNLFNGTIPFELGKLINLQGLDLGFNSFIGKIPPNFGNLNSLLWLMLADNSLTGEIPKELGNCSSLLWLNLANNKLTGKFPSELTKIGRNAMKTFESNRKNTYGVIAGNSECLSMKRWIPADYPPFSFVYSILTRKNCRTLWDRLLKGYGIFPMCTFDPSTKSSHKFGYVQLSGNQISGEIPSEIGSMMNFSMLHLGDNKFIGKFPLEISGLPLIVLNMTRNKFSGEIPSEIGNMKCMQNLDLSWNNFSGEFPTSLVNLDELSRFNISYNPLLSGKVPPSGHLLTFDKDSYVGDNLLDFPKFFDNTLDQRNKTFHNKHMKKSTIWYLCVALTLSILVSGLLFLTVYFLVKSPSLEKRKNQGHDDSVKIFNLINNTIFTHADILKATGNFKEERIIGKGGFGTVYKGVFPDGREVAIKKLQREEGMEGEKEFRAEMKVLVSGQEFGWPHPNLVTLYGWCLYGSQRILVYEYIGGGNLEELVTDTTNFKYIRRLEVAIDVAKALVYLHHECYPPIVHRDVKASNVLLDKDGKAKVTDFGLARVFDVGDTHVSTIVAGTVGYVAPEYGQTWRATTKGDVYSFGVLIMELATGRRAVDGSEECLVECVSRKGLNYFGLVGDAKEMFELLQVGVKCTNDSPQERPNMKEVLAMLIKIYNSYTNLNYGHFV 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00720 1066 Pfam Leucine rich repeat N-terminal domain 31 76 IPR013210 -
Car05g00720 1066 SMART LRR_typ_2 295 319 IPR003591 -
Car05g00720 1066 SMART LRR_typ_2 368 392 IPR003591 -
Car05g00720 1066 SMART LRR_typ_2 106 130 IPR003591 -
Car05g00720 1066 SMART LRR_typ_2 416 439 IPR003591 -
Car05g00720 1066 SMART LRR_typ_2 152 176 IPR003591 -
Car05g00720 1066 SMART LRR_typ_2 440 464 IPR003591 -
Car05g00720 1066 Gene3D - 497 563 - -
Car05g00720 1066 Pfam Protein kinase domain 790 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00720 1066 Gene3D Phosphorylase Kinase; domain 1 751 871 - -
Car05g00720 1066 Gene3D Ribonuclease Inhibitor 32 148 IPR032675 -
Car05g00720 1066 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 1057 - -
Car05g00720 1066 ProSiteProfiles Leucine-rich repeat profile. 132 153 IPR001611 GO:0005515
Car05g00720 1066 SMART serkin_6 790 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00720 1066 Gene3D Ribonuclease Inhibitor 246 336 IPR032675 -
Car05g00720 1066 Gene3D Ribonuclease Inhibitor 431 614 IPR032675 -
Car05g00720 1066 Gene3D Ribonuclease Inhibitor 616 696 IPR032675 -
Car05g00720 1066 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 1057 - -
Car05g00720 1066 SUPERFAMILY L domain-like 65 307 - -
Car05g00720 1066 SUPERFAMILY L domain-like 223 484 - -
Car05g00720 1066 SUPERFAMILY L domain-like 570 698 - -
Car05g00720 1066 CDD STKc_IRAK 796 1053 - -
Car05g00720 1066 ProSitePatterns Protein kinases ATP-binding region signature. 796 819 IPR017441 GO:0005524
Car05g00720 1066 ProSitePatterns Serine/Threonine protein kinases active-site signature. 914 926 IPR008271 GO:0004672|GO:0006468
Car05g00720 1066 Pfam Leucine Rich repeat 153 168 IPR001611 GO:0005515
Car05g00720 1066 Pfam Leucine Rich repeat 369 383 IPR001611 GO:0005515
Car05g00720 1066 Gene3D Ribonuclease Inhibitor 337 430 IPR032675 -
Car05g00720 1066 Gene3D Ribonuclease Inhibitor 149 245 IPR032675 -
Car05g00720 1066 ProSiteProfiles Protein kinase domain profile. 790 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00720 1066 Pfam Leucine rich repeat 93 141 IPR001611 GO:0005515
Car05g00720 1066 Gene3D Transferase(Phosphotransferase) domain 1 873 1062 - -
Car05g00720 1066 Pfam Leucine Rich Repeat 179 201 IPR001611 GO:0005515
Car05g00720 1066 Pfam Leucine Rich Repeat 418 440 IPR001611 GO:0005515
Car05g00720 1066 SUPERFAMILY Protein kinase-like (PK-like) 765 1051 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00720 Car-Chr5 40446562 40450843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00720 464 681 Receptor kinase-like Gene Family AT1G55610 29.707 6.36e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Car05g00720 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00720 - - cam:101504173 2119.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00720 05 40446562 40450843 Car05g00720 05 40446562 40450843 ECH