Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00718 ATGGGGTGTGCGAGTTCGACTTCGAAGCAAACTGTGTCGGTAACACCGGCGATTGAAAGCAAAAGCGCGTTAAGAAGGGAAGTGAGTGAGTTGGATGATAAGAAGAGGAGTGAGTCGGGAAGAGCGAGTCAGAATGAGTTAGAGAGAGCGAGTTCGAATGGTGTTTGTTGTGAGTCTTTGAGTTTTAGATTGGGGAATTTGAATAAGTATGTGAAAGGTGAACACGTGGCAGCTGGTTGGCCGGCTTGGCTTAGTGCTGTTGCCGGTGAAGCTATTCATGGTTGGGTTCCTCTTCGTCCTGATGCCTTTGAGAAAATCCAGAAGATTGGGCAAGGGACATATAGCAGTGTATTTAAGGCGAGAGAGATTGACACAGGGAAGATAGTGGCGCTGAAGAAGGTGCGGTTCAACAATCTCGAACCGGAAAGTGTGAGGTTCATGGCGCGGGAGATAATGATTCTTAGAAAGCTTGATCATCCCAATATCATAAAGCTTGAAGGATTGATTACTTCTAAATTGTCTTGTAGCTTATACCTTGTGTTTGAGTACATGGAGCATGACATTTCAGGGCTCTTGGGCAATCCTGATGTCAAATTCAGTGAATCCCAGATAAAGTGCTACATGAAGCAATTATTATCTGGTGTTGAGCACTTTCACTCGCGGGGTGTGATGCATCGAGACATCAAAGGACCAAATCTTCTTGTGAACAATGAAGGAATATTGAAAGTGGCGGATTTTGGATTGGCAAACTTTGCCCGTTCTGGTCACGAACATCCCCTCACTAGTCGTGTTGTCACCTTATGGTATCGTCCGCCAGAGCTTTTGCTTGGTTCGACAGACTACGATTCATCGGTGGATCTATGGAGTGTTGGCTGCATCTTTGCAGAGCTACTTGTTAGGAATCCTATTCTTCAGGGAAGAACTGAGGTGGAACAGTTACACAAAATTTTCAAGCTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAAACTTCCTAGTGCAACTTTGTTCAAGCCACAACTACCATATGATAGTTGCCTCCAAGAGTATTTTAAAGATTTTCCTCCAACCAGTGTGAATTTGCTACAAACTCTTCTCTCTGTTGAACCTTACAAACGTGGAACTGCGACATCTGCTCTCTCATCAGAGTATTTCAAGACACAACCTTATGCGTGCGACCCATCAAGCTTGCCAAAATACCCACCTAGCAAAGAAATTGATGCAAAGCAAAGGGCTGCAGAGTTAAGGAAAAAGGTTGATGAACGAGTTCGTCGAACTGAAACAATAAAACCATCAAGAAAGTCACTAGGATTCAATAAACTAGTTCCAGCAGAGGACTCAAAAAATCAGACTCAGAATTCTGATAAGGTTAAAGGTAGATCTTTCCGAATCCTTAAAGAAGAGAAGAGTAACCTTGGTGAGGAGTTGCAAAAGCCATTAAACTATAAACCTGAAGATGCTTCCCATATGAATAATGCATCTCAAGGAGATATTCCTTTTTCTGGACCATTACAAATTTCAACATCAAGTGGCTTTGCTTGGGCAAAAAGTCGGAAAGACGAAGCTTCAATTCGATCACATTGTCGAACTTTTTCTAGAGAACATACTTTCAATAATCCCTTAGGACCTTCTACATTAAACTCAAGGAATAATAACTTGGACGCAATAAATATGGAAAATAAGGAGTTTTGTGGGAGCAGCATCAAATATAGAGTTTCTAAGACTTCAAAGCAGAATCAGTTGAGTAGGTTCGATCGTCTAGATTCATTTGATGATACTTCTGATGAGTACCAGTCGCAAGAACTATCGATGGTGCTTTATCGAGGAGAAGATCCATTATCCAAAAGAAGTAACCTGTGTTATCAGGATCAAAGAGAAAAGGTTGAATTTTCAGGACCCCTACTGTCTAGAATGCACACGGTTGACGAGCTATTAGAAAGGCGCGAGCGTCATATCCGGCGAACTGTTCGAAAATCATGGTTTCAGAAAGGTAAGAAGCATGGGAAATTAATCTAA 2022 0.4209 MGCASSTSKQTVSVTPAIESKSALRREVSELDDKKRSESGRASQNELERASSNGVCCESLSFRLGNLNKYVKGEHVAAGWPAWLSAVAGEAIHGWVPLRPDAFEKIQKIGQGTYSSVFKAREIDTGKIVALKKVRFNNLEPESVRFMAREIMILRKLDHPNIIKLEGLITSKLSCSLYLVFEYMEHDISGLLGNPDVKFSESQIKCYMKQLLSGVEHFHSRGVMHRDIKGPNLLVNNEGILKVADFGLANFARSGHEHPLTSRVVTLWYRPPELLLGSTDYDSSVDLWSVGCIFAELLVRNPILQGRTEVEQLHKIFKLCGSPPDEYWKKTKLPSATLFKPQLPYDSCLQEYFKDFPPTSVNLLQTLLSVEPYKRGTATSALSSEYFKTQPYACDPSSLPKYPPSKEIDAKQRAAELRKKVDERVRRTETIKPSRKSLGFNKLVPAEDSKNQTQNSDKVKGRSFRILKEEKSNLGEELQKPLNYKPEDASHMNNASQGDIPFSGPLQISTSSGFAWAKSRKDEASIRSHCRTFSREHTFNNPLGPSTLNSRNNNLDAINMENKEFCGSSIKYRVSKTSKQNQLSRFDRLDSFDDTSDEYQSQELSMVLYRGEDPLSKRSNLCYQDQREKVEFSGPLLSRMHTVDELLERRERHIRRTVRKSWFQKGKKHGKLI 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00718 673 SUPERFAMILY Protein kinase-like (PK-like) 97 394 IPR011009 -
Car05g00718 673 MobiDBLite consensus disorder prediction 434 459 - -
Car05g00718 673 MobiDBLite consensus disorder prediction 25 43 - -
Car05g00718 673 MobiDBLite consensus disorder prediction 25 48 - -
Car05g00718 673 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 35 664 - -
Car05g00718 673 Pfam Protein kinase domain 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00718 673 ProSiteProfiles Protein kinase domain profile. 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00718 673 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Car05g00718 673 SMART serkin_6 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00718 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Car05g00718 673 PANTHER CELL DIVISION PROTEIN KINASE 35 664 - -
Car05g00718 673 Gene3D Phosphorylase Kinase; domain 1 91 185 - -
Car05g00718 673 Gene3D Transferase(Phosphotransferase) domain 1 186 427 - -
Car05g00718 673 CDD STKc_CDK9_like 103 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00718 Car-Chr5 40193703 40201835 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00718 101 433 Core Cell Cycle Gene Families AT5G10270 48.424 2.78e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Car05g00718 Pkinase 3.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00718 - - gmx:100803328 1007.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00920 07 8150910 8154714 Car05g00718 05 40193703 40201835 ECH
Car05g00718 05 40193703 40201835 Car05g00718 05 40193703 40201835 ECH