Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00713 ATGGAGGGTCGCCGGAGAATAACGCTTTACGATCAAATGAAATCGGGTAACACAACCAACAATCGAAGTTCACTTGCAAGTTTAATCCTCAACGACGCCGTTTTAACCAACCAGAAAACCCTAAACCAAACACTCTTAGACATTATACAAGAACACGAACCAAACAACGTTGTTAACAACAACAATAACACGAAGGATCGAAAATCGTGGAAAGCGTTTAAAGAGTTACTTCGTCTAAAGCGTCGTAACTCGGACGAGTCCGACGCCGTTGGGGAAGATCCTGGAAATTCGGATCTGCCGGAATTGCTTGCCGGTGGAGTTGCCAATTCGGAGACGGCACAGGGTAGCATATCGCTGATGGATTTGTTGGAGGAAATGGAAGTTGATTTGGATCGAAGCAGTGATGTCGATGATGGTGATGACGTGGACGATGAATATTATCAGAAACGAGTGGAAGAAGGGAATGTTCCGGTGGAACAGAATTGCTGCGTGTGTATGGTGAGGCATAAAGGTGCAGCGTTTATACCGTGTGGACACACGTTTTGCAGGATGTGTTCAAGAGAGATTTGGGTGAGTAGAGGGAATTGTCCACTTTGCAATAATTCTATATTGGAAATTCTTGATATTTTCTGA 633 0.4423 MEGRRRITLYDQMKSGNTTNNRSSLASLILNDAVLTNQKTLNQTLLDIIQEHEPNNVVNNNNNTKDRKSWKAFKELLRLKRRNSDESDAVGEDPGNSDLPELLAGGVANSETAQGSISLMDLLEEMEVDLDRSSDVDDGDDVDDEYYQKRVEEGNVPVEQNCCVCMVRHKGAAFIPCGHTFCRMCSREIWVSRGNCPLCNNSILEILDIF 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00713 210 CDD RING-HC 162 199 - -
Car05g00713 210 PANTHER OS01G0917900 PROTEIN 99 210 - -
Car05g00713 210 PANTHER OS01G0917900 PROTEIN 2 86 - -
Car05g00713 210 PANTHER OS01G0917900 PROTEIN 2 86 - -
Car05g00713 210 PANTHER OS01G0917900 PROTEIN 99 210 - -
Car05g00713 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 210 IPR013083 -
Car05g00713 210 Pfam Zinc finger, C3HC4 type (RING finger) 159 204 - -
Car05g00713 210 SMART ring_2 162 199 IPR001841 -
Car05g00713 210 ProSiteProfiles Zinc finger RING-type profile. 162 200 IPR001841 -
Car05g00713 210 SUPERFAMILY RING/U-box 144 206 - -
Car05g00713 210 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00713 Car-Chr5 40017329 40017961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00713 4 210 C3H Transcription Factor Family AT3G25030 33.591 2.14e-36 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00713 - - cam:101506094 380.178