Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00706 ATGTCGACGAAACCGGTGGTGTGGCTTCGAACAAAATCGTTGGAGTTGGTGgagGCAAGACGAATAAAAGAAAGCATAGAAGAGAGTGGATTTAAGGTTAATGAGGTTCATGATCATGACCAAGATATTTTAGTGTGCCGAATCAGGATTAAAGGAATGGCATGCACAAGTTGCTCTGAGTCTGTTGAGAGAACACTTCAAATGATTGATGGAGTGAAAACGGCAATATTTGGTCTAGCTTTAGAGGAGGCAAAAGTGCATTATGATCCTAGCCTTGCCGATCCCGAAAAGATAATTGAAGCTATAGAAGATGCGGGGTTTGGAGCAGAACTTATTGGCTCTGGGAATGACGCGAATAAAGTTTATCTAAAAATTGAAGGGACTGATTCTGAAAAAGATGCTAACGTGTTAGTGTCTTCTCTTGAGTTAGCTGTAGGTGTGAATCGTGTTGAAATGGATTTTTCAGATTATATAGTTACCGTTAGCTATGATCCGGACATTACAGGTCCGAGAACTCGAACTCATTGTGTTCAGGAAGCTAGCCGTGGCTCCAAGATGTACCAAGCAACCTTGTATTCTCCTTCAGGACAAAGAGAAAGGGATAAGGTGAATGAAATTCCCACGTGTAGGGATCAGTTTTTGTTCAGCTGCTTGTTTTCTGTACCTGTGTTTGTGTTTGCTATGGTGCTTCCCATGCTTCCTCCATATGGCAACTGGTTGAACTATAAGATCCATAATATGCTTACTCTTGGGTTGTTTTTAAGATGGATCCTTTGCACGCCTGTGCAGTTCATAGTTGGGAAAAGGTTCTATGTGGGATCATATCATGCACTGAGGAGAAGATCTGCTAACATGGATGTGCTGGTTGCGTTAGGCACTAATGCTGCTTATTTTTACTCGTTATATATTGTAATAAAAGCACTGACTTCAGATACAATCGAAGGACAAGATTTCTTTGAGACCAGTTCCATGTTGATATCCTTTATCCTATTAGGAAAATATTTGGAGATTGTGGCCAAAGGGAAAACATCAGATGCTTTAGGAAAGCTGACACAACTTGTTCCAGATAAAGCATATTTAGTAGAAATTGATACTGATGCAAATATCATCACAGAGACAGAAATTGACACTCAACTTATACAAAAGAATGACATAATTAAGATTGTGCCTGGGGCTAAAATTTCCATTGATGTATTGTTATAA 1203 0.3948 MSTKPVVWLRTKSLELVEARRIKESIEESGFKVNEVHDHDQDILVCRIRIKGMACTSCSESVERTLQMIDGVKTAIFGLALEEAKVHYDPSLADPEKIIEAIEDAGFGAELIGSGNDANKVYLKIEGTDSEKDANVLVSSLELAVGVNRVEMDFSDYIVTVSYDPDITGPRTRTHCVQEASRGSKMYQATLYSPSGQRERDKVNEIPTCRDQFLFSCLFSVPVFVFAMVLPMLPPYGNWLNYKIHNMLTLGLFLRWILCTPVQFIVGKRFYVGSYHALRRRSANMDVLVALGTNAAYFYSLYIVIKALTSDTIEGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVEIDTDANIITETEIDTQLIQKNDIIKIVPGAKISIDVLL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00706 400 SUPERFAMILY HMA, heavy metal-associated domain 41 115 IPR036163 GO:0046872
Car05g00706 400 PRINTS Copper-transporting ATPase 1 signature 45 70 - -
Car05g00706 400 PRINTS Copper-transporting ATPase 1 signature 71 94 - -
Car05g00706 400 PRINTS Copper-transporting ATPase 1 signature 100 120 - -
Car05g00706 400 PRINTS Copper-transporting ATPase 1 signature 213 234 - -
Car05g00706 400 PRINTS Copper-transporting ATPase 1 signature 248 268 - -
Car05g00706 400 PRINTS Copper-transporting ATPase 1 signature 268 293 - -
Car05g00706 400 ProSiteProfiles Heavy-metal-associated domain profile. 45 111 IPR006121 GO:0046872
Car05g00706 400 CDD HMA 48 110 IPR006121 GO:0046872
Car05g00706 400 Gene3D - 340 400 - -
Car05g00706 400 Gene3D - 45 114 - -
Car05g00706 400 Pfam Heavy-metal-associated domain 48 107 IPR006121 GO:0046872
Car05g00706 400 PANTHER ATP7, ISOFORM B 15 398 - -
Car05g00706 400 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 15 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00706 Car-Chr5 39872811 39875791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00706 17 397 Primary Pumps ATPases AT1G63440 50.904 1.88e-125 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00706 K17686 - gmx:100793894 627.091