Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00704 ATGGCTACTCAAACCCCTTCCGATTCTTTCGACCCTTCTCTTTGTGACGTCGACGACTACGTTTTGGAAAATGGACCAGGAGATTTGGCATGGGACACATTTCATTATGTTTATGAGCTTGTGCAGAGTGGCAATTTGGCCTTTCGAGAAAACAGAATGGAAGAGGCAATCAACTTTTACTCAAGAGCCAATAGCGCCAAATCTGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTTTATTAGGATTAGCCAATATATAGTGCATAGATCATCATCATCCTCAGAACATAGGCCATTGAGTGGGCTTGATCCCACAACACTTGCCGAACTGGGTTTGAAGGATGCTGCAAAGCTTGTGGAACTTCAAAGTAATTCAGTTAAATCATACCTTTTAAAGGCCAATGCTCTTCTTCTATTAGATAAGTATGATATGGCTCGGGATGCTATTCTTTCAGGACTGCAAGTTGATCCTTATAGTAATTCCCTTCGGGAATGTCTTCAAAAAGTGGAAAGAGTATCATCTAGTTCAACAGGGGTGAGTACCCATAGACAACCAGAGCGCAATGATGACTTTGAGTGCACTCTCTGCCTGAAGTTACTCTATGAACCTGTCACGACCCCCTGTGGGCATTCTTTTTGCCGTTCATGTCTATTTCAGACAATGGATCGTGGGAACAGATGCCCGTTGTGCAGGACAGTTCTGCTCATTAGTCCTAGAACATGTTCAATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCAGAGGAATATGCCGAAAGGAAACAAGAGCACGACAGTTTAGTCAATGTTGGTGCAGATACGCTACCTCTTTTTGTCATGGATGTTGTCTTACCATGTCAAAAGTTTCCACTAAATATATTTGAACCTCGGTATAGACTTATGGTAAGAAGAATAATGGAAGGCAACCATCGGATGGGAATGGTTATACTAGATCCTTCAACAGGTTCATTAGCTGAGTTTGGCTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCTGATGGTCGTTTTTATATAGAGATTGAAGGTCGTAGGAGATTTCGCATCCTACGTTCTTGGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACAAGATATAATGCCACCAGAAGGAACACCAGAAAGAGATAATTTACAGGAATTGACAAATACTGCAGCAGCATGTGCGCGAACATGGATAGGAAGAGCTAAACAAGTAGCAAGACAAGATCAAAGAAGATTTGACAAACTCGTGACTGTTGAAGGAATGATACCCTCATTAAGAGACCCCGAGCGCTTTAGTTTTTGGCTAACCACCATCTCCAATCGGAGGCCTTCAGAAAGATTGGATCTCCTACGCATTAGAGATACCAAAGAGAGAATTAAGCGAGGCCTGATATTTCTTCGAGCAGAGGAACAAGGCTGCACGATTCAGTAA 1458 0.4252 MATQTPSDSFDPSLCDVDDYVLENGPGDLAWDTFHYVYELVQSGNLAFRENRMEEAINFYSRANSAKSGDPIILSNRSAAFIRISQYIVHRSSSSSEHRPLSGLDPTTLAELGLKDAAKLVELQSNSVKSYLLKANALLLLDKYDMARDAILSGLQVDPYSNSLRECLQKVERVSSSSTGVSTHRQPERNDDFECTLCLKLLYEPVTTPCGHSFCRSCLFQTMDRGNRCPLCRTVLLISPRTCSISVTLKNIIQKNFPEEYAERKQEHDSLVNVGADTLPLFVMDVVLPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVILDPSTGSLAEFGCEVEITECEPLPDGRFYIEIEGRRRFRILRSWDQDGYRVAEVEWIQDIMPPEGTPERDNLQELTNTAAACARTWIGRAKQVARQDQRRFDKLVTVEGMIPSLRDPERFSFWLTTISNRRPSERLDLLRIRDTKERIKRGLIFLRAEEQGCTIQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00704 485 SUPERFAMILY RING/U-box 190 258 - -
Car05g00704 485 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Car05g00704 485 Pfam ATP-dependent protease La (LON) substrate-binding domain 278 475 IPR003111 -
Car05g00704 485 Gene3D Tetratricopeptide repeat domain 32 177 IPR011990 GO:0005515
Car05g00704 485 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 14 478 - -
Car05g00704 485 Gene3D - 277 379 IPR046336 -
Car05g00704 485 SMART lon_5 278 477 IPR003111 -
Car05g00704 485 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Car05g00704 485 SMART tpr_5 37 70 IPR019734 GO:0005515
Car05g00704 485 SMART tpr_5 128 161 IPR019734 GO:0005515
Car05g00704 485 ProSiteProfiles Lon N-terminal domain profile. 276 477 IPR003111 -
Car05g00704 485 SMART ring_2 195 232 IPR001841 -
Car05g00704 485 Pfam Zinc finger, C3HC4 type (RING finger) 194 232 - -
Car05g00704 485 PANTHER RING FINGER PROTEIN 127 14 478 - -
Car05g00704 485 SUPERFAMILY TPR-like 36 168 IPR011990 GO:0005515
Car05g00704 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 275 IPR013083 -
Car05g00704 485 SUPERFAMILY PUA domain-like 278 475 IPR015947 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00704 183 236 C3H Transcription Factor Family AT1G74990 35.088 1.37e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00704 - - gmx:100802277 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00704 05 39230506 39240704 Car05g00704 05 39230506 39240704 ECH