Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00670 ATGGTTGTACCTGCAGCAACAAGCATGTTCAAGATTCTCTTGAAATACAAGCCTGAAGATAAGGCAGAAAAGAAAGAGAGGCTTTTGAAAAGGGCTCAGGCAGAGGCTGAGGGCAAGACAATTGAAACCATGAAGCCTATTAATGTGAAGTATGGTCTCAATCATGTTACCTACCTCATTGAGCAGAACAAAGCTCAACTTGTTGTGATTGCTCATTATGTCGACCCAATTGAATTGGTTGTGTGGCTTCCAGCTTTGTATAGGAAGATGGAAATTTCATACTCAACAAGCCTATTCAAGATTCTCCTGAAATACAAGCCTGAAGATAAGGCAGAAAAGAAAGAGAGGCTTTTGAAAAGGGCTCAGGCAGAGGCTGAGGGCAAGAAGCCTATTAATGAGAAGTATGGTCTCAATCATGTTACCTACCTCATTGAGCAGGAAGATGGAAATTCCATACTGTATGGTGGAACAGTTTTTTGTTGA 483 0.412 MVVPAATSMFKILLKYKPEDKAEKKERLLKRAQAEAEGKTIETMKPINVKYGLNHVTYLIEQNKAQLVVIAHYVDPIELVVWLPALYRKMEISYSTSLFKILLKYKPEDKAEKKERLLKRAQAEAEGKKPINEKYGLNHVTYLIEQEDGNSILYGGTVFC 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00670 160 PRINTS Ribosomal protein L7A/RS6 family signature 49 63 IPR018492 -
Car05g00670 160 PRINTS Ribosomal protein L7A/RS6 family signature 68 81 IPR018492 -
Car05g00670 160 PRINTS Ribosomal protein L7A/RS6 family signature 84 94 IPR018492 -
Car05g00670 160 Gene3D - 3 94 IPR029064 -
Car05g00670 160 PRINTS Ribosomal protein L7A family signature 11 24 IPR001921 -
Car05g00670 160 PRINTS Ribosomal protein L7A family signature 45 65 IPR001921 -
Car05g00670 160 PANTHER BNAA03G47020D PROTEIN 95 147 - -
Car05g00670 160 PANTHER BNAA03G47020D PROTEIN 6 94 - -
Car05g00670 160 SUPERFAMILY L30e-like 6 95 IPR029064 -
Car05g00670 160 Gene3D - 95 154 IPR029064 -
Car05g00670 160 Coils Coil 22 42 - -
Car05g00670 160 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 37 94 IPR004038 -
Car05g00670 160 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 95 147 - -
Car05g00670 160 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 6 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00670 Car-Chr5 37248670 37249805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00670 6 95 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 83.333 2.43e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00670 K02936 - gmx:100792324 157.918