Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00650 ATGGCTTTCTTTGGTAGAGTTGGGAATATGCTAAGGAATGCAACAAATAGGAAGATCACTTCCGAGTTTCGTTCATTTCCATCTGTTTTCCAAGCCATACGGTGCTTTTCGAGTTCTGCGTCTGCAAAGCTGTTTGTAGGAGGTGTTTCATATTCTACTGATGAACAAAGTTTGAGGGAAGTGTTTTCAAAATATGGCGAAGTTGTTGACGTAAGGATAATTATGGATCGCGAAACTGGTAGGTCCAAAGGATTTGGCTTTGTTACTTACAGTACAGTTGAGGAGGCATCAAGTGCTATTCAGGCCTTGGATGGACAGGATCTGCATGGTCGCCGGGTTGGTGTTAATTTTGCCAATGAAAGACCCCGTGGATTtggtggtggtggtggtggttttgatggatcttatggaaacacttcttatggtggtggaggtggtggtggATATCAAGGTGGTTATGGTAACTCTTCATACAGTGCTCCTTCAAGCggtggtggtggctatggtgatgctgatggctatggtggcaatgctgctggaggttatagtggAAGCGGTTATGGATCAGCTAGCAATTTTGGGGGCAGCAGCGCTAGCAATAACTACAATGCTTATAGCAACAATGCGACTGTAGGAGGTGGTGAAATCAATACTCCTAACTATGGTAGTGCTCCTGCTGTTGGTGGTTATGGTGGTAACAATGTGAATCACGGTGCTACTGATGCTGTTAACTATGGTAGTGCTCCTGCTGTTGGTGGTTATGGTGGTGATAACAATGCAAATTATGGTGCTCCTGTGGTTGGTGGAGAAAGCAATTCTGTTAACTATGGTACTGCTCCTGTTGATAGTGGTTATGGCACTGCTGCTGGGTTTGGCAAGAGTGATAATTATTATAGTACTGCTGGTGGTGGTCCAAGCAATGGTTTTGCCAGTAGTCAATACCCGGGAAATGCCACAGCGTATGGCAGCGGAGGTTCAGGTACTGGTAGCAGCTTTGCTGGTGGATATGATCAAAGTGGAGGGGTTGGATACAACGAAAATGGCCAAGTTGATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGATTTTGGAGGCTCTGTGGCCGAAAATTTCAGGAATGATGATCACGAAGTTGGTGCTTTTGCTAAACGGGCTTGA 1404 0.3205 MAFFGRVGNMLRNATNRKITSEFRSFPSVFQAIRCFSSSASAKLFVGGVSYSTDEQSLREVFSKYGEVVDVRIIMDRETGRSKGFGFVTYSTVEEASSAIQALDGQDLHGRRVGVNFANERPRGFGGGGGGFDGSYGNTSYGGGGGGGYQGGYGNSSYSAPSSGGGGYGDADGYGGNAAGGYSGSGYGSASNFGGSSASNNYNAYSNNATVGGGEINTPNYGSAPAVGGYGGNNVNHGATDAVNYGSAPAVGGYGGDNNANYGAPVVGGESNSVNYGTAPVDSGYGTAAGFGKSDNYYSTAGGGPSNGFASSQYPGNATAYGSGGSGTGSSFAGGYDQSGGVGYNENGQVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFGGSVAENFRNDDHEVGAFAKRA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00650 467 CDD RRM_HP0827_like 43 119 - -
Car05g00650 467 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 263 - -
Car05g00650 467 MobiDBLite consensus disorder prediction 335 356 - -
Car05g00650 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 113 IPR000504 GO:0003723
Car05g00650 467 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 263 - -
Car05g00650 467 SUPERFAMILY RNA-binding domain, RBD 40 151 IPR035979 GO:0003676
Car05g00650 467 Coils Coil 350 351 - -
Car05g00650 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Car05g00650 467 MobiDBLite consensus disorder prediction 302 323 - -
Car05g00650 467 Gene3D - 13 160 IPR012677 -
Car05g00650 467 SMART rrm1_1 43 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00650 Car-Chr5 35783283 35786371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00650 40 122 C2H2 Transcription Factor Family AT2G19380 34.940 5.41e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00650 K12741 - ccaj:109815980 223.402