Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00644 ATGGATGGACAACAACATCATCGTAGAAGAAGAGTTGGTGTAAATGGAGAAATTGAAAGAGTCACAGTTGCATCACGGAATCCTATTAGCAACGGTGTTTACGATATGACTCATGCTATTCCTTTTCCCGTTCCTAATAGAAACATGATTTCGCCATATGTTGAAGATGGCCATCTTATCTTTTGTGAAACCAACATCCATCCTACCAGGATCAATAATGTGGTTCAATCATATAGTAGGAATATTTCACATGATTTGTCCCAAGATGGTCACTATATTTTTCAAGAAAACAATGTTAATCAAAGCAATCAAATTCTAACAAGAAGAAATGTCGAAGAATCTACTCATAATTTTGAAAGAATCAAGATTGAAGAAAAAATGATAACTGAGACTACTACGACATGTTCTATATGTCTTGTAGATTTTTCCATTGGATCCACAGCAATTCGCTTGCCCAGTCCGTGTTCTCATATTTTTCATGAAAATTGTATTATGAAGTGGTTCAATATATCGAGCACATGCCCTTTATGTCGTAGGTCTATCTCGTGA 549 0.3552 MDGQQHHRRRRVGVNGEIERVTVASRNPISNGVYDMTHAIPFPVPNRNMISPYVEDGHLIFCETNIHPTRINNVVQSYSRNISHDLSQDGHYIFQENNVNQSNQILTRRNVEESTHNFERIKIEEKMITETTTTCSICLVDFSIGSTAIRLPSPCSHIFHENCIMKWFNISSTCPLCRRSIS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00644 182 Pfam Ring finger domain 134 178 IPR001841 -
Car05g00644 182 SMART ringv_2 134 178 IPR011016 GO:0008270
Car05g00644 182 SUPERFAMILY RING/U-box 122 181 - -
Car05g00644 182 SMART ring_2 135 177 IPR001841 -
Car05g00644 182 CDD RING-H2_PA-TM-RING 134 178 - -
Car05g00644 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 182 IPR013083 -
Car05g00644 182 ProSiteProfiles Zinc finger RING-type profile. 135 178 IPR001841 -
Car05g00644 182 PANTHER SI:CH211-59O9.10 114 182 - -
Car05g00644 182 PANTHER SI:CH211-59O9.10 114 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00644 Car-Chr5 35607344 35607892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00644 112 180 C3H Transcription Factor Family AT5G06490 36.842 2.48e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00644 - K11982 cam:101490108 93.5893