Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00641 ATGGAGAACCAACATTATCATGCAATAAGAGCAACGGGAGTAACCGGAGAAGTCAATCTTGTACCATGGAGTGTTGTTTCTTATAGTACTGTACGAGACGGGTATTTTATTCTTGATGAAAACAACATCAATGCTATTAGGGAGGTTTCAATGACAAGAACAAATTTTGAAACTGCTCACAATCTTCAAAGAATAGAAATCGAAGAAGGAACGATAGATTTTGAAGAAATGACATGTTCTATATGTCTTATGGAGTTAATGGTTGGGTCAAAAGTAGTTATGTTGTCTTGTTCTCATATCTATCACGACCATTGCATTATAATGTGGCTAGATAGATCTAATACGTGCCCTTTGTGTCGTGGGTCTATTTCATGA 375 0.3627 MENQHYHAIRATGVTGEVNLVPWSVVSYSTVRDGYFILDENNINAIREVSMTRTNFETAHNLQRIEIEEGTIDFEEMTCSICLMELMVGSKVVMLSCSHIYHDHCIIMWLDRSNTCPLCRGSIS 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00641 124 ProSiteProfiles Zinc finger RING-type profile. 79 120 IPR001841 -
Car05g00641 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 124 IPR013083 -
Car05g00641 124 CDD RING-H2_PA-TM-RING 78 120 - -
Car05g00641 124 SMART ring_2 79 119 IPR001841 -
Car05g00641 124 SUPERFAMILY RING/U-box 71 123 - -
Car05g00641 124 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 53 120 - -
Car05g00641 124 Pfam Ring finger domain 78 120 IPR001841 -
Car05g00641 124 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 53 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00641 Car-Chr5 35432552 35432926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00641 62 123 C3H Transcription Factor Family AT4G12190 43.939 3.10e-14 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00641 - K22378 cam:101490108 87.0409