Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00637 ATGGAGCACCAACAATATGATGGAATATTAACAGCATTTCTAAGAGGAGAAAATGGAAGAGTCACATTTGAAGTCCGGTATCCTGTTAGGAATGGTGTTTATGAAGTAATTCCTTCTATTTCATTTCGAGCTCCCGAAAGAAACTTGATTTTGTCACATATGTTTGTTGAAGATGCTAACCTTATCCTTTGCGAAAGGAACGACAACCTTATCAATGATCTTCTTCATAGGATAAATCCGCAAGATATCTTGCCGATTTATGCTCTAGGCAACCACTACATTCTTCAAGATAACAACATCAACCATGTTCATGTTCCTACAAGAAGACATTTTGTTCATAACTTTGAAAGAATTAAAATTCATGAAGAAACGACAGCTCAAACTTCGACATGTTCTATATGTCTTGTTGATTTTTCTTTTGGGTCGAAAGCAATTCGCTTGCCTAGTCCATGTTCACATGTTTATCATGAGAATTGTATTATGAGGTGGCTCAATGAATCAAACACATGCCCTTTGTGTCGTAGACTTATCTCCTAA 537 0.3631 MEHQQYDGILTAFLRGENGRVTFEVRYPVRNGVYEVIPSISFRAPERNLILSHMFVEDANLILCERNDNLINDLLHRINPQDILPIYALGNHYILQDNNINHVHVPTRRHFVHNFERIKIHEETTAQTSTCSICLVDFSFGSKAIRLPSPCSHVYHENCIMRWLNESNTCPLCRRLIS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00637 178 SMART ringv_2 130 174 IPR011016 GO:0008270
Car05g00637 178 SMART ring_2 131 173 IPR001841 -
Car05g00637 178 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 96 175 - -
Car05g00637 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 178 IPR013083 -
Car05g00637 178 CDD RING-H2_PA-TM-RING 130 174 - -
Car05g00637 178 SUPERFAMILY RING/U-box 111 177 - -
Car05g00637 178 Pfam Ring finger domain 130 174 IPR001841 -
Car05g00637 178 ProSiteProfiles Zinc finger RING-type profile. 131 174 IPR001841 -
Car05g00637 178 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 96 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00637 Car-Chr5 35343361 35343897 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00637 89 174 C3H Transcription Factor Family AT1G14200 31.461 2.07e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00637 - - pvu:PHAVU_007G098000g 93.2041