Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00633 ATGGAACCGCAACAACATTATAGAAGATTTGTTGTATTGGGAGAAAATGGAAGAGTTACGGTTGAATTGTTTTATCCTATTACCAATGGTGTTTACGAAATGATTCCTGCTATTCCTTTTTGCACTCATAATAGAAACATCATTTTCTCACATATTATTCTTTGTGAAAGCAACAACAACCATATCAATGAGGTTCATAGTAGAATGAAAACTCAAGTTGTCATACCAATTTATGGTCAAGATGGTCACTACGTTATTCAAGAAAATAACATCAATCAAAATAATCAATTTCCGACGAGAAGAATAACACAGGTCGACGAAGTTACCCGAAGATGCTCAATTCAAAATCTTGAAAGAATTAGAATTGATGAAAAAACTACTACTGAGGCTTTAACATGTTCCATATGTCTTGAGGAGTTTATCTTTGGATCGAAAGCTATTCGTCTGCCTAGTCCATGTTCACACATTTATCACGAAAATTGTATTATGAGATGGCTCAATAGGTCAAACACATGCCCTTTGTGCCGTAGACCTATCTCATGTATTCTCTTGTTTTGTTAA 561 0.344 MEPQQHYRRFVVLGENGRVTVELFYPITNGVYEMIPAIPFCTHNRNIIFSHIILCESNNNHINEVHSRMKTQVVIPIYGQDGHYVIQENNINQNNQFPTRRITQVDEVTRRCSIQNLERIRIDEKTTTEALTCSICLEEFIFGSKAIRLPSPCSHIYHENCIMRWLNRSNTCPLCRRPISCILLFC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00633 186 ProSiteProfiles Zinc finger RING-type profile. 133 176 IPR001841 -
Car05g00633 186 SMART ring_2 133 175 IPR001841 -
Car05g00633 186 Pfam Ring finger domain 132 176 IPR001841 -
Car05g00633 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 181 IPR013083 -
Car05g00633 186 SMART ringv_2 132 176 IPR011016 GO:0008270
Car05g00633 186 PANTHER SI:CH211-59O9.10 78 180 - -
Car05g00633 186 SUPERFAMILY RING/U-box 113 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00633 Car-Chr5 35079080 35079640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00633 123 176 C3H Transcription Factor Family AT3G60080 51.852 2.12e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00633 - - cam:101490108 96.2857