Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00632 ATGGAACCGCAACAACATTATAGAAGATTTGTTGTATTGGGAGAAAATGGAAAAGTTACGGTTGAATTGTTTTATCCTATTACCAATGGTGTTTACGAAATGATTCCTGCTATTCCTTTTCGCACTCATAATAGAAACATCATTTTCTCACATATGTGTATCGAAGATGATCACTTTATTCTTTGTGAAAGCAACAACAACCATATCAATGAGGTTCATAGTAGAATCAAAACTCAAGATGTCATACCAATTTATGGTCAAGATGGTCACTACATTATTCAAGAAAATAACATCAATCAAAATAATCAAATTCCGACGAGAAGAATAACACACGTCGACGAAGTTACCCGAAGATGCTCAATTCAAAATCTTGAAAGAATTAGAATTGATGAAAAAACTACTACTGAGGCTTTAACATGTTCCATATGTCTTGAGGAGTTTATCTTTGGATCGAAAGCTATTCGCCTGCCTAGTCCATGTTCACACATTTATCACGAAAATTGTATTATGAGATGGCTCAATAGGTCAAACACATGCCCTTTGTGCCGTAGACCTATCTCATGTATTCTCTTGTTTTGTTAA 582 0.3454 MEPQQHYRRFVVLGENGKVTVELFYPITNGVYEMIPAIPFRTHNRNIIFSHMCIEDDHFILCESNNNHINEVHSRIKTQDVIPIYGQDGHYIIQENNINQNNQIPTRRITHVDEVTRRCSIQNLERIRIDEKTTTEALTCSICLEEFIFGSKAIRLPSPCSHIYHENCIMRWLNRSNTCPLCRRPISCILLFC 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00632 193 SUPERFAMILY RING/U-box 120 188 - -
Car05g00632 193 SMART ring_2 140 182 IPR001841 -
Car05g00632 193 ProSiteProfiles Zinc finger RING-type profile. 140 183 IPR001841 -
Car05g00632 193 SMART ringv_2 139 183 IPR011016 GO:0008270
Car05g00632 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 92 185 - -
Car05g00632 193 Pfam Ring finger domain 139 183 IPR001841 -
Car05g00632 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 188 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00632 Car-Chr5 35044447 35045028 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00632 130 183 C3H Transcription Factor Family AT3G60080 51.852 3.71e-13 64.7