Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00627 ATGGAGCCACCACAACATTATAGAGCAATAGAGGAAATTGAAGAAAATATGACGGCCTTTGACATGATTCACGGTGGTAATACGTACATGTTAAGTATGTTGGCCCGAACACGGTTCTATCAACACAGGCAGACTTATGGTGGTCACTTTGTTGTTGATGAAAATAATACCAACGGGATCTCTGTGGTTCATACaagaagaagaagaagaagaaATGTTGACACTACTCAAATACAAAGACGCTCTGAATACAACTTCGAAAGAATTATAATTGAAGATAATTCTGAAGCTATGACGTGTTGTATCTGTCTCGTAGAGTTTTTGGTTGGATCTGAGGCTATTCAATTGCCTGATCCATGTCTACATATATATCATCAAGATTGTATCATGAAATGGTTAGATAAATGTAACACATGTCCTATGTGTCGTAGAGAAGTTTATTAA 444 0.3536 MEPPQHYRAIEEIEENMTAFDMIHGGNTYMLSMLARTRFYQHRQTYGGHFVVDENNTNGISVVHTRRRRRRNVDTTQIQRRSEYNFERIIIEDNSEAMTCCICLVEFLVGSEAIQLPDPCLHIYHQDCIMKWLDKCNTCPMCRREVY 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00627 147 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKE 68 146 - -
Car05g00627 147 ProSiteProfiles Zinc finger RING-type profile. 100 143 IPR001841 -
Car05g00627 147 SUPERFAMILY RING/U-box 83 146 - -
Car05g00627 147 Pfam Ring finger domain 99 143 IPR001841 -
Car05g00627 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 147 IPR013083 -
Car05g00627 147 PANTHER SI:CH211-59O9.10 68 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00627 Car-Chr5 34385489 34385932 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00627 85 146 C3H Transcription Factor Family AT5G01980 42.188 1.20e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00627 - K22378 cam:101490108 87.0409