Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00625 ATGGAACAGCAACAACATTATAGAAGATTTGTTGTATTGGGAGAAAATGGAAGAGTTACGGTTGAATTGTTTTATCCTATTATTAATGGTGTTTATGAAATGATTCCTGCTATTCCTTTCCGCACTCATAATAGAAACATCATTTTTTCACATATGTGTATCGAAGATGATCACTTTATTCTTTGTGAAAGCAACAACAACCATATCAATGAGGTTCATCGTAGAATAAAAACTCAAGATGTCATGCCAATCTATGGTCAAAATGGCCACTACGTTATTCAAGAAAATAACATCAATCAAAGTAATCAAATTCCGACAAGAAGAATAACAAACGTCGACGAAGTTATCCGAAGATGCTCTATTCAGAATCTTGAAAGAATTAGAATTGATGAAAAAACTACTACGGAGGCTTTAACATGTTCCATATGTCTTGAGGAGTTTATCTTTGGATCGAAAGCTATTCGTTTGGCTAGTCCATGTTCACACATTTATCACGAAAATTGTATTATGAGATGGCTCAATAGGTCAAACACATGCCCTTTGTGTCGTAGACCTATCTCATGTATTATGTTGTTTTGTTAA 582 0.3385 MEQQQHYRRFVVLGENGRVTVELFYPIINGVYEMIPAIPFRTHNRNIIFSHMCIEDDHFILCESNNNHINEVHRRIKTQDVMPIYGQNGHYVIQENNINQSNQIPTRRITNVDEVIRRCSIQNLERIRIDEKTTTEALTCSICLEEFIFGSKAIRLASPCSHIYHENCIMRWLNRSNTCPLCRRPISCIMLFC 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00625 193 CDD RING-H2_PA-TM-RING 139 183 - -
Car05g00625 193 SMART ringv_2 139 183 IPR011016 GO:0008270
Car05g00625 193 ProSiteProfiles Zinc finger RING-type profile. 140 183 IPR001841 -
Car05g00625 193 SUPERFAMILY RING/U-box 120 189 - -
Car05g00625 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 188 IPR013083 -
Car05g00625 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 79 186 - -
Car05g00625 193 Pfam Ring finger domain 139 183 IPR001841 -
Car05g00625 193 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 79 186 - -
Car05g00625 193 SMART ring_2 140 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00625 Car-Chr5 34340655 34341236 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00625 130 183 C3H Transcription Factor Family AT3G60080 51.852 2.10e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00625 - - cam:101490108 96.2857