Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00592 ATGATTAGAGGGGGGTGTAGCTTCGAAGAAAAGGTTAGAATGGCACAAAATGCGGGCTACCCAGCTGCAATTGTCTATGACAATGAAGATGGTGGCGTCTTGGTTGCAATGGCAGGAAATTCTGCTGGTATAAGAATACATGTTGTATTTGTATCAAAAGCTTCGGGTTTGGCTCTAGAAGGATCACAATTTGATGCTAATCATTATGACACTAAGATGAATGAACTGCTTGCCAGTGATGGGCAAGAATTCTTCGCCTCATATGATGAAGTCCATGATAGCTTTGATGCAATGGGGCTGCAAGAAAACCTTTTGCAAGGCATATATGCTTACGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGAGGAATTGTTCCTTTTTGCAAAGGTCTGGATCTCGATTACGGATTTGTTCAATTCCAGGCTTTGGTTTTGGCCCCTACGAGGGAGCTAGCTCAACAGATTGAGAAGGTTATGCGAGCTCTTGGCGATTTCCTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAACACATTCTCTCTGCTGCTTGTTTGTTATGA 579 0.437 MIRGGCSFEEKVRMAQNAGYPAAIVYDNEDGGVLVAMAGNSAGIRIHVVFVSKASGLALEGSQFDANHYDTKMNELLASDGQEFFASYDEVHDSFDAMGLQENLLQGIYAYGFERPSAIQQRGIVPFCKGLDLDYGFVQFQALVLAPTRELAQQIEKVMRALGDFLGVKVHACVGGTSVREDQHILSAACLL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00592 192 Pfam DEAD/DEAH box helicase 139 186 IPR011545 GO:0003676|GO:0005524
Car05g00592 192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 187 IPR027417 -
Car05g00592 192 PANTHER - 132 189 - -
Car05g00592 192 Gene3D - 135 191 IPR027417 -
Car05g00592 192 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 132 189 - -
Car05g00592 192 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 132 - -
Car05g00592 192 Pfam PA domain 6 59 IPR003137 -
Car05g00592 192 Gene3D - 1 73 - -
Car05g00592 192 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 93 121 IPR014014 GO:0003724
Car05g00592 192 PANTHER - 58 132 - -
Car05g00592 192 SUPERFAMILY PA domain 2 47 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00592 Car-Chr5 31250593 31251237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00592 55 188 Eukaryotic Initiation Factors Gene Family AT3G13920 68.790 2.60e-67 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00592 K03257 - sind:105163354 230.72