Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00585 ATGGCAAGTTCAAGAGAAGGTTATGAAGCAAAGCAAGAGGGAGGTGAAAATAGCAATAATAATAGTATTGAAAAGATTTCAAAGGCAGCTTCTACTTCAAGACAATGGTCATCAACAGGGTTAAGAAATCCAAGAATTGTGAGAGTATCTCGTACATTTGGTGGAAAAGATAGGCATAGCAAAGTTTGCACTATAAGAGGTTTAAGAGATAGAAGAATTAGGCTTTCAGTTCCAACAGCAATTCAATTATATGATCTTCAAGACAAACTTGGTTTAGGACAACCAAGTAAAGTAATTGATTGGTTACTTGAAGCAACAAAATTTGACATTGATAAACTCCCTCCACTTCAATTCCCACAAGGCTTTTCACAATTTCATCATCCACAAACCCTACTTCCTTTTCATGAATCAATTACTAGTGCTTCTCATGAACTTTCACTTGGTCCTTTGTATGATCCTAGTTCATCATTTGTTGGGATTCAAAATCTCATGGCAAGGTCAAAGTTTTGGGAAATGGATTCAAGGGTTAATAATAAAGGGAAAGAAGTTGAAAGAGAGTACTTTGTTGAAAAGGGTAAGTGGATCAAAACAAATGAAGAAGAAAATCATGAAGCTAGTTACAATAATTTTCAACAAACTTCAACTCAAAAGCTTTTTCCTATGGAGACTCATTCTACTTTACCAAGTTTTCTTAACAATAATGCTATGTCATATAACAACTACCATTTAGAACCTTCTAATTTGTCTTTATCTCAATTTGGAGGAAGCCATGGATTGTTCCAATCACAACAAGTAGATCCAAATCAAAGTAGTGGAAATGGTTTGCAATTTCCATTTTCTTTTCCACTTCAACAATCTACTTCACAATTATTGTTTGGACcttcttcttcttctacttcACCATCATCATCATCACTTTTGAGTAATCCTTTTATGACAACAACAAATTCAGTTGAAAATGATCCAAGAGTACAACAATTCAACCATTTTCAGTTCATAAACTCATCTAGTTCTTCTTCTCAAGCTATGACTCATCCACTCCTTCCATCTTTTCACTCATTCAACTCACCTGCTGTTAGACCTTTTCCAATGCCATTTAGTTCCAAGCTTCTTGATTTGGATAACAATCACAATGGTAACCAACATGATAATAAGGGTTGTCGCGGCGATCGTTCTTGA 1179 0.3435 MASSREGYEAKQEGGENSNNNSIEKISKAASTSRQWSSTGLRNPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKFDIDKLPPLQFPQGFSQFHHPQTLLPFHESITSASHELSLGPLYDPSSSFVGIQNLMARSKFWEMDSRVNNKGKEVEREYFVEKGKWIKTNEEENHEASYNNFQQTSTQKLFPMETHSTLPSFLNNNAMSYNNYHLEPSNLSLSQFGGSHGLFQSQQVDPNQSSGNGLQFPFSFPLQQSTSQLLFGPSSSSTSPSSSSLLSNPFMTTTNSVENDPRVQQFNHFQFINSSSSSSQAMTHPLLPSFHSFNSPAVRPFPMPFSSKLLDLDNNHNGNQHDNKGCRGDRS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00585 392 Pfam TCP family transcription factor 55 199 IPR017887 -
Car05g00585 392 PANTHER TRANSCRIPTION FACTOR TCP17 2 384 - -
Car05g00585 392 MobiDBLite consensus disorder prediction 1 41 - -
Car05g00585 392 MobiDBLite consensus disorder prediction 376 392 - -
Car05g00585 392 MobiDBLite consensus disorder prediction 373 392 - -
Car05g00585 392 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 384 IPR005333 GO:0003700
Car05g00585 392 ProSiteProfiles TCP domain profile. 55 113 IPR017887 -
Car05g00585 392 MobiDBLite consensus disorder prediction 13 41 - -
Car05g00585 392 MobiDBLite consensus disorder prediction 259 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00585 Car-Chr5 30969960 30972134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00585 6 383 TCP Transcription Factor Family AT5G60970 38.596 4.87e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Car05g00585 TCP 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00585 - - cam:101498052 728.783