LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g00573	ATGTGGAGATTTAAGCCATTCATGCACAAAGAGCAAAGCGGTCTTGAAGGCCGTTCTATAGATGTTGGAAATCTTAAAATAAATGTCCACAAGGTCATTGCTGAAGGAGGTTTCTCATGTGTCTACTTGGCTCGTGATGCTGTACATATGTCGAAACAGTATGCTTTGAAGCACATCATATGTAATGATGAAGAATCACTTGGATTGGTGAAGAAGGAGATATCTGTCATGAAGTTGCTGGTAGGACATCCCAATGTTGTCACACTTCATGCTCATGCCATCTATGATATGGGTCGGACAAAAGAGGCGTTCCTTGTAATGGAATTTTGTGAGAAGTCTCTGGTTAGTGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAGGCAGGTTCTTTTAATCTTCAGGGATGTGTGTAATGCAGTCTTCGCCATGCACTGCCAGTCTCCACCTATTGCTCACCGAGACTTGAAAGCAGAGAATCTTCTGTTAGGTGCAGAAGGTTTATGGAAGTTGTGTGATTTTGGAAGCATTTCCACCAATCACAAATGTTTTGAGAGGCCAGAAGAAATGGGAATTGAGGAAGATAATATCAGAAAGTACACAACCCCTGCCTACAGAGCCCCTGAGATGTGGGATCTGTTCCTGAGAGAAGTCATTAACGAAAAAGTGGACATATGGGCACTTGGGTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCATTTGATGGGGAATCGAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTTACCTAAGTTCAGTTCATTCCTCACAGACTTGATCAGAGACATGCTTCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGTTTGGTTTCGTGTTAATGAGCAGCTACCCATTGATTTACAAAAGTCTTTACCTGACAGGCCACCTGAATTGCCCTCTTCCAACATTCACGAAGGTGCTTCAATGTCCACAAACAAATCCCCTGCAATGCCTCGCAGGAATCCACCTCCTCCTCCTTCAGTTGGAGAATCCAAAACTACCCCTCAGCCATCTCTTGCTCCTAGGGGAGGGGAAAGTGGGGGGCAGCTTGGTGCTTTCTGGTCCACTCTGCATGCAAAGGATTCACCTGTCCCCGAGGAAAAGGGAAAACCTATATATGATGAAGAACGATCTAGCCACCATGTATCATTGAAACATGACAGAGTTCGTCCAGACAATGATCAGTTACCCAAAAATGCTAGTTCTAACAAAGGGGCCAACACACAAACTCAGACTGTAAAAAGCAATATGCATGGAAAATTACCGAAGCCTGCTGCCGTATCAGCCAAGGACTTCGAAATAAATTTTTTTCCAGATAAAGATCATGCAAGTGAGAGGCATATGTCAAATATGGAGAAGAATAATAATAACTTCCAAGACCAGGCTTTTAACAATTTTGTTGCAGAATTTGATACCAATAAACTGAACTCCGGGCATGGTAACAAATCCACAAGCGAAGAAGCATTGGAGTCTTTGGTGGAGAAACTCAAAGATCAGCTGAAGGATGCTAACTTAGAGAAAGCTGAAATAACTGCAAAGTATGAAAAGCTTACTGCTATCTGCCGTTCACAAAGGCAAGAACTGCAGGATCTCAAGCAAGCACTTGCAGCAAGAACTCCATCTCCAAATAGAGAGGGTTTTAGAGTCTCTCCTGGAGTTGCATCATCTGCATCTTTGCAGGATAGAAATGAACGGAAAACTCCTAATTCAGAACCAAAGTCATGGCAAGCTTTCCCAGAGGATGCTGAAGGGGTGAAGTCCCTTTCAGCAGACAATGCATTTAAATCTGTTAGGTCAAGAAATGGTCAACAGAACATGCAGGCTACTCAACCAGCTTCTGATTTCGATTCATGGGGTTTCGGCACAGATACATTTAGTGCTGTTCATGCTGGTAGCCCACAGATGCCAAGACCTGGTGAAGGGAGTAAAGCTCATGTTTTTGGTGAGGCAAAGGCTTTTGAGAGCAAATCAAATACTCAACCTGCTGGATGGGCTGGTTTTTAA	2046	0.436	MWRFKPFMHKEQSGLEGRSIDVGNLKINVHKVIAEGGFSCVYLARDAVHMSKQYALKHIICNDEESLGLVKKEISVMKLLVGHPNVVTLHAHAIYDMGRTKEAFLVMEFCEKSLVSVLESRGAGYFDERQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLGAEGLWKLCDFGSISTNHKCFERPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKFSSFLTDLIRDMLQARPDDRPDITQVWFRVNEQLPIDLQKSLPDRPPELPSSNIHEGASMSTNKSPAMPRRNPPPPPSVGESKTTPQPSLAPRGGESGGQLGAFWSTLHAKDSPVPEEKGKPIYDEERSSHHVSLKHDRVRPDNDQLPKNASSNKGANTQTQTVKSNMHGKLPKPAAVSAKDFEINFFPDKDHASERHMSNMEKNNNNFQDQAFNNFVAEFDTNKLNSGHGNKSTSEEALESLVEKLKDQLKDANLEKAEITAKYEKLTAICRSQRQELQDLKQALAARTPSPNREGFRVSPGVASSASLQDRNERKTPNSEPKSWQAFPEDAEGVKSLSADNAFKSVRSRNGQQNMQATQPASDFDSWGFGTDTFSAVHAGSPQMPRPGEGSKAHVFGEAKAFESKSNTQPAGWAGF	681

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g00573	681	CDD	STKc_GAK_like	26	298	-	-
	Car05g00573	681	ProSiteProfiles	Protein kinase domain profile.	27	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car05g00573	681	MobiDBLite	consensus disorder prediction	549	600	-	-
	Car05g00573	681	MobiDBLite	consensus disorder prediction	667	681	-	-
	Car05g00573	681	MobiDBLite	consensus disorder prediction	409	431	-	-
	Car05g00573	681	Pfam	Protein kinase domain	29	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car05g00573	681	MobiDBLite	consensus disorder prediction	612	634	-	-
	Car05g00573	681	SMART	serkin_6	27	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car05g00573	681	PANTHER	NUMB-ASSOCIATED KINASE, ISOFORM A	1	669	-	-
	Car05g00573	681	MobiDBLite	consensus disorder prediction	331	345	-	-
	Car05g00573	681	SUPERFAMILY	Protein kinase-like (PK-like)	28	341	IPR011009	-
	Car05g00573	681	MobiDBLite	consensus disorder prediction	612	681	-	-
	Car05g00573	681	MobiDBLite	consensus disorder prediction	301	436	-	-
	Car05g00573	681	Gene3D	Transferase(Phosphotransferase) domain 1	10	305	-	-
	Car05g00573	681	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Car05g00573	681	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	669	-	-
	Car05g00573	681	Coils	Coil	500	548	-	-
	Car05g00573	681	MobiDBLite	consensus disorder prediction	375	408	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g00573	Car-Chr5	30030713	30033763	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g00573	26	292	Miscellaneous Gene Families	AT2G34180	30.249	8.72e-21	94.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Car05g00573		Pkinase	8.8e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g00573	K08853		-	gmx:100808507	1048.11