Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00562 ATGCACTTTGGGAACACCACAACACAGAGGGTTGAGTCGGCGCATTGGAGTTTGAAAATGATATTACAAGACAATACTGGTGATATATGTAGTGTTAAGAAAACCATCAATAACATGATTGTATTACAACACAGTGAGATAATAACATCATTTAAAAAGAGCATAATTCAAAAGATCCATCAACATAGTAACAGATTGTACGCCAATTTGTGTGTTGTATCCAAAAATGCAATAGATCACATTGCGGCAGAGTTTGATTGCATGAAGTATGTAGACGTTATTCATGTTTGGTGTAGTAAATTAACTTTTCATGATGATGGATCGGGTAAACCTTCAGAATCATCTGTGAAACATGAAATAGATGTGATAGTGAAAAAGTTTGATGAACTTGATGGTTTTGCGAAAGGGGTTTTAGACCCATTGCTCGCGCAACCACAACAGACCCCTAATCATCATTCCCAAATGGTTCGCTCCAATGGCGTCAAGCTTCTTCGTTCCCTTTCCCCTAAACTCCTCCGTAACGCCGATAAATCCACATATGAAGGAGTGTTGCAAAGGGGGTACAGGACATTGAATTCCGGATTTCGCGATCCTTCCAAAGTTTTTGGAAATTATTTTTCCAATGTTGGAGATGGTGTTAATTTGAAGAACTGCGTGCTATTGGGAGCAATAAATACTTATTTTGGGGCATCTAGATCCATTCACGGCTCAGCATCATTGGCAAGAGACTATTATGAAGTTCTTGGTGTCAGTAAGAATGCAAGTTCTTCTGAAATAAAGAAAGCATACTATGGGCTTGCAAAAAAGCTCCATCCTGACACAAACAAAGATGATCCTGAAGCTGAAAAGAAATTTCAAGAAGTTTCAATGGCTTATGAGACTTTGAAGGATGAGGAAAAGCGTCAACAGTATGATCAGGTTGGCCATGATGCTTTTGTAAACCAAGAAAGCAATGGTTTTGGAGGCAGCGGTGGCTTTAATCCCTTTGAGCAGATATTCCGTGATCATGATTTTGTCAACAGCTTCTTTCATCAGAACATTGGCGGACAGGATGTCAAGACTTTCGTTGAACTTTCCTTTATGGAAGCTGTCCGAGGATGCACCAAAACCATTACATTTCAAACAGATATGCTTTGTAACACTTGTGGTGGGAGCGGGGTTCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTAAAGGGTCTGGAGTGACATCTGTACAAGCTGGCATATTTAAAATGGAAACTACATGTGGTGCGTGTAAGGGAACTGGCAAAATTGTATCGAGTTTCTGCAAGTCATGCAGGGGTGCAAAGGTTAACAAAGGAACCAAGTCGGTCAAATTGGATATTATGCCTGGGATTGACAACAATGAAACCATTAAGGTTTACAGAAGTGGTGGTGCAGATCCTGATGGAGATCATCCTGGTGATCTCTATGTTACTATCAAGGTCAGGGAAGATCCTGTCTTCCGTAGGGAAGGATCTGATATTCATGTAGATACTGTTTTAAGTATCACTCAGGCAATTTTGGGTGGAACCATTCAGGTCCCAACTCTTACAGGAGATGTTGTTCTTAAGGTACGTCCTGGAACCCAACATGGTCAGAAGGTGGTTCTGAAAAAGAAAGGGATCAAGACCAAAAATTCTTATACATTAGGCGATCAATATGTTCATTTTAACATCACCATCCCAACAGACCTGACAGAGAGACAGCGTGAATTGATTGAAGAATTTCAGAAGGAAGAGCAAGATGATTCTGATAAAGAGAAGAAAACTGCTTCGGCTTCTGGTTGA 1797 0.4057 MHFGNTTTQRVESAHWSLKMILQDNTGDICSVKKTINNMIVLQHSEIITSFKKSIIQKIHQHSNRLYANLCVVSKNAIDHIAAEFDCMKYVDVIHVWCSKLTFHDDGSGKPSESSVKHEIDVIVKKFDELDGFAKGVLDPLLAQPQQTPNHHSQMVRSNGVKLLRSLSPKLLRNADKSTYEGVLQRGYRTLNSGFRDPSKVFGNYFSNVGDGVNLKNCVLLGAINTYFGASRSIHGSASLARDYYEVLGVSKNASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSMAYETLKDEEKRQQYDQVGHDAFVNQESNGFGGSGGFNPFEQIFRDHDFVNSFFHQNIGGQDVKTFVELSFMEAVRGCTKTITFQTDMLCNTCGGSGVPPGTRPETCKRCKGSGVTSVQAGIFKMETTCGACKGTGKIVSSFCKSCRGAKVNKGTKSVKLDIMPGIDNNETIKVYRSGGADPDGDHPGDLYVTIKVREDPVFRREGSDIHVDTVLSITQAILGGTIQVPTLTGDVVLKVRPGTQHGQKVVLKKKGIKTKNSYTLGDQYVHFNITIPTDLTERQRELIEEFQKEEQDDSDKEKKTASASG 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00562 598 CDD DnaJ 243 297 IPR001623 -
Car05g00562 598 Gene3D - 379 439 - -
Car05g00562 598 SMART dnaj_3 242 300 IPR001623 -
Car05g00562 598 Gene3D - 352 481 - -
Car05g00562 598 SUPERFAMILY HSP40/DnaJ peptide-binding domain 351 486 IPR008971 GO:0006457|GO:0051082
Car05g00562 598 ProSiteProfiles Zinc finger CR-type profile. 366 444 IPR001305 GO:0031072|GO:0051082
Car05g00562 598 Gene3D DnaJ domain 240 351 IPR036869 -
Car05g00562 598 ProSitePatterns Nt-dnaJ domain signature. 285 304 IPR018253 -
Car05g00562 598 SUPERFAMILY Chaperone J-domain 242 346 IPR036869 -
Car05g00562 598 CDD DnaJ_C 350 568 - -
Car05g00562 598 Pfam DnaJ C terminal domain 355 565 IPR002939 -
Car05g00562 598 ProSiteProfiles dnaJ domain profile. 243 308 IPR001623 -
Car05g00562 598 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 184 593 - -
Car05g00562 598 Pfam DnaJ domain 243 305 IPR001623 -
Car05g00562 598 Hamap Chaperone protein DnaJ [dnaJ]. 240 593 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Car05g00562 598 Pfam DnaJ central domain 379 439 IPR001305 GO:0031072|GO:0051082
Car05g00562 598 SUPERFAMILY HSP40/DnaJ peptide-binding domain 490 576 IPR008971 GO:0006457|GO:0051082
Car05g00562 598 PRINTS DnaJ domain signature 300 319 IPR001623 -
Car05g00562 598 PRINTS DnaJ domain signature 245 263 IPR001623 -
Car05g00562 598 PRINTS DnaJ domain signature 280 300 IPR001623 -
Car05g00562 598 PRINTS DnaJ domain signature 263 278 IPR001623 -
Car05g00562 598 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 184 593 - -
Car05g00562 598 CDD DnaJ_zf 379 439 IPR001305 GO:0031072|GO:0051082
Car05g00562 598 Gene3D - 486 596 - -
Car05g00562 598 MobiDBLite consensus disorder prediction 573 598 - -
Car05g00562 598 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 366 440 IPR036410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00562 Car-Chr5 28882283 28899669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00562 237 305 C2H2 Transcription Factor Family AT1G74250 43.243 8.12e-08 53.5