Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00559 ATGAGTGTTATGTATGAAGAGCTAAGGAGAAACCAAGAAATGGATTCAACAAGTATTGGACATTCCAAACAACAACATTCTGGAGTACTAATGAGGTACAGTTCAGCTCCAAGCTCATTTTTTACAAGCCTTATTGACAACAACAACAACACTCATAGCTATGCCAACAATGAAGAATCTTTTACAACAAGTAATTCAGAAATGGATACCATGTTGTCTAAATTGATATCTACCAACAATGGATGGAACAATTCTTCTGAGCCTCTGCAAGAGTTTGGAGTCAAGGTTGTTAAGCAAGAAGAAAGTGAATCTAATGGTTATTCTTATGGTGGTTCTGAGTTGACTTACCAAGACTTGTCAAATGGTTCTTCCAATTCTTTTTATGGATCTTTTGTTGGAGTTAACTCTATGGATTCAGAGAATTGTACTCAATCTAAAATTGGTGTTAGGAATTGCTCCAATCTCATTAGGCAAAAGAGTTCACCCGCTGGATTTTTCTCTAGTGAAAATGGTCTTGCTACATTGAGAGAGCTAGAAATCTTCAAAGCCAATGAAATATCAAATGCACAAACAAGAGGGTTCCATGGTACACTTAACTTCTCATCTACTTGCTTGAAAAGAATGCCACAAATAGCTGAAAATGGAATCCAAAGCATAGATTCAAATTGCGACCAAGGTAGAGACATAATAAATGAAAATGGTAGCACCAAATGTCACATGCCTAGCTTCAATAATGAATTTTGGGACAATTCTTCATTCAATGCTCAAAAAGTAGAAAGTGAAGATGAAATCATGTTTTCTACCACAAATGGTTTGGAATCTCAGGAAGGAGATTTTTGCTATCAAAACCTTGGTTTGACTCACCAATTGAGTCTTCCTAGTTCATCCACTAAGATGACATCTATTGAGAAGTTTCTTCAAATTCAAGGATCTGCTCCTTGTAAAATTCGAGCCAAAAGAGGGTTTGCCACTCATCCAAGAAGCATTGCAGAAAGGGTAAGAAGAACGCGAATTAGTGAAAGAATCAAGAAACTGGAAGGCCTTTTCCCAAAATTAGACAAGCAAACAAACACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAAGGACAAGTTCAGATACTCACAGATTGTAGAGAAAAATGCAAATGTACAAGCAATGAGAAGCTATACACTAAACATTGTAGCTGA 1203 0.3658 MSVMYEELRRNQEMDSTSIGHSKQQHSGVLMRYSSAPSSFFTSLIDNNNNTHSYANNEESFTTSNSEMDTMLSKLISTNNGWNNSSEPLQEFGVKVVKQEESESNGYSYGGSELTYQDLSNGSSNSFYGSFVGVNSMDSENCTQSKIGVRNCSNLIRQKSSPAGFFSSENGLATLRELEIFKANEISNAQTRGFHGTLNFSSTCLKRMPQIAENGIQSIDSNCDQGRDIINENGSTKCHMPSFNNEFWDNSSFNAQKVESEDEIMFSTTNGLESQEGDFCYQNLGLTHQLSLPSSSTKMTSIEKFLQIQGSAPCKIRAKRGFATHPRSIAERVRRTRISERIKKLEGLFPKLDKQTNTADMLDLAVEYIKDLQGQVQILTDCREKCKCTSNEKLYTKHCS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00559 400 CDD bHLH_AtbHLH_like 327 379 IPR045239 -
Car05g00559 400 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 20 391 - -
Car05g00559 400 Pfam Helix-loop-helix DNA-binding domain 328 373 IPR011598 GO:0046983
Car05g00559 400 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 20 391 - -
Car05g00559 400 MobiDBLite consensus disorder prediction 1 26 - -
Car05g00559 400 SMART finulus 328 378 IPR011598 GO:0046983
Car05g00559 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 388 IPR036638 GO:0046983
Car05g00559 400 Gene3D - 324 395 IPR036638 GO:0046983
Car05g00559 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 372 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00559 Car-Chr5 28628343 28632933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00559 14 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 33.850 5.64e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car05g00559 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00559 - - gmx:100812802 493.426