Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00558 ATGGCTTCTCTACTCTCACTACCCAATTTCCTTTCCCTAACAACCCAACCACCAAAATCAAGTTACCGGACTTACACCACAAAATTTAACAACTTCAAACCCAAAACGACACTGTTGTTGCAACCTTCTTCTCTCGCAGTCGGAATTTCAACGACACGCCGTTTTAGGAGACACTTTGCGGTTGCTGAACAAGCCACGGTGACTTCTCCTAAAGAGGCTGATAGAAAGCTCTACATTGGTAACATTCCTCGTACTGTTACTAATGATGAACTTGCACAGATTGTTCAAGAACATGGTTCTGTTGAGAAAGCCGAGGTTATGTATGATAAGTACTCTAAAAGGAGCCGTCGCTTTGCATTTGTTACAATGAAAACCATTGAGGATGCAAATGCAGTAGTTGAGAAACTCAATGGCACTCAAATCGGAGGGCGTGAGATTAAAGTGAATATAACTGAAAAACCTTTAACAACAGTAGATTTGTCACTCCAAGCTGAGGAATCCACATTTGTTGACAGTCCCTACAAGGTATATGTGGGAAATCTGGCTAAAACAGTAACATCTGATAGCCTTAAAAATTTATTCTCTGAGAAAGGAAAAGCTCTTGGTGCTAAGGTTTCACGGGTTCCTGGGACCTCAAAATCCAGCGGTTTTGGTTTTGTTACATTTTCATCAGATGAGGATGTAGAAGCTGCTATCTCATCTTTCAACAATGCTCTGTTAGAAGGGCAAAAAATCCGTGTGAATAAGGCGTAG 753 0.4117 MASLLSLPNFLSLTTQPPKSSYRTYTTKFNNFKPKTTLLLQPSSLAVGISTTRRFRRHFAVAEQATVTSPKEADRKLYIGNIPRTVTNDELAQIVQEHGSVEKAEVMYDKYSKRSRRFAFVTMKTIEDANAVVEKLNGTQIGGREIKVNITEKPLTTVDLSLQAEESTFVDSPYKVYVGNLAKTVTSDSLKNLFSEKGKALGAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00558 250 SMART rrm1_1 76 149 IPR000504 GO:0003723
Car05g00558 250 SMART rrm1_1 175 248 IPR000504 GO:0003723
Car05g00558 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 246 IPR000504 GO:0003723
Car05g00558 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 147 IPR000504 GO:0003723
Car05g00558 250 Gene3D - 160 250 IPR012677 -
Car05g00558 250 SUPERFAMILY RNA-binding domain, RBD 170 250 IPR035979 GO:0003676
Car05g00558 250 CDD RRM_HP0827_like 76 153 - -
Car05g00558 250 PANTHER OS02G0815200 PROTEIN 1 250 - -
Car05g00558 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 153 IPR000504 GO:0003723
Car05g00558 250 SUPERFAMILY RNA-binding domain, RBD 61 152 IPR035979 GO:0003676
Car05g00558 250 Gene3D - 57 156 IPR012677 -
Car05g00558 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 250 IPR000504 GO:0003723
Car05g00558 250 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 1 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00558 Car-Chr5 28476228 28479569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00558 77 250 Eukaryotic Initiation Factors Gene Family AT2G23350 30.460 2.90e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00558 K13126 - gmx:100783567 311.227