Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00550 ATGGCTCAAAGAACAGAAAACGAAGAAACCGAATTCAAAGTTCCAGAAACAATAACCGTTTGCATCAACAACTGTGGCGTAACCGTAACCGGTAACGCTGCAACAAACAACATGTGTCAAAATTGCTTCACCGCTTCAACCGCCACAACCTCATCCACCGTCGGAATCTCATCTCAATCTTCCAGATCCGGTGTTATTTCCGTTAATTCCGTTCGTTCACCGAAGAGATCTCTTCCGGAAGAATCATCGGAGATTACCGATCGTAATTCGTCAGATCAAACGACGATTTCCGAGGCGAAGCGTGTTGTTAGCAGATGCTCCGGTTGCCGGAGAAAGGTAGGGTTGACCGGATTCCGATGTAGATGCGGTGATCTTTTCTGTTCTGAACATCGATATTCCGATCGTCATGATTGTAGCTTTGATTATAAAGCTGCTGGTAGAGAAGCTATTGCTAGAGAAAATCCTGTTATCAGAGCCGCGAAAATTGTTAAGGTTTGA 498 0.4478 MAQRTENEETEFKVPETITVCINNCGVTVTGNAATNNMCQNCFTASTATTSSTVGISSQSSRSGVISVNSVRSPKRSLPEESSEITDRNSSDQTTISEAKRVVSRCSGCRRKVGLTGFRCRCGDLFCSEHRYSDRHDCSFDYKAAGREAIARENPVIRAAKIVKV 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00550 165 SMART AN1_Zf_4 106 143 IPR000058 GO:0008270
Car05g00550 165 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 165 - -
Car05g00550 165 MobiDBLite consensus disorder prediction 53 76 - -
Car05g00550 165 MobiDBLite consensus disorder prediction 53 94 - -
Car05g00550 165 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 5 1 165 - -
Car05g00550 165 Pfam AN1-like Zinc finger 106 143 IPR000058 GO:0008270
Car05g00550 165 Gene3D - 79 161 IPR035896 -
Car05g00550 165 ProSiteProfiles Zinc finger AN1-type profile. 100 146 IPR000058 GO:0008270
Car05g00550 165 SUPERFAMILY AN1-like Zinc finger 89 159 IPR035896 -
Car05g00550 165 Gene3D - 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00550 Car-Chr5 27029954 27031311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00550 8 165 C2H2 Transcription Factor Family AT3G52800 37.647 6.76e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00550 - - pvu:PHAVU_005G036400g 241.121