Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00533 ATGAGGAAACCGGATTTGATCACGGGAATAAACAACAAAATGaacaacaacaacaacaacaacaacaTTAGCAAGAACAAGCTAAGGAAAGGTTTATGGTCACCTGAAGAAGATGAGAAGCTTGTAAGGTACATGATAACTAAAGGACAAGGTTGTTGGAGTGACATTGCTAGGAATGCTGGTCTTCAAAGGTGTGGCAAAAGTTGTCGTCTTCGTTGGATAAATTACTTGAGACCCGATCTTAAGCGTGGCGCATTTTCGCCACAAGAGGAAGAACTCATCATTCATTTGCACTCCATTCTTGGCAATAGGTGGTCTCAGATTGCAGCACGACTACCAGGTCGCACCGACAATGAAATAAAGAACTTTTGGAATTCCACACTAAAAAAGAGATTGAAAACCAACAACAACAACACCAGTCAATCTCCAAGTGACTCATCAGATCAACAAATAGATGTTTTTGATATGAAAAACAATATGATCATGCCAATTAATGAACAAGatctcatgacattatgcatggataattcctcatcgtcaacatcatcatcatccatcCAATCCATGCAAATGCATGCCATGGTTTTGTCTGACCAATTTGATCATCCATTTTCCTTGTTGTCCAATATTAACAACATACCTACCTGCTTAACACAAGATGGCAATATGGTTGTTGATGATATTGGGCTTCATAGTGATGATCATTATGGGATTTTGGAGGCTAATAATAAAATGGGGTTATTAGAAAATGACTTTGAACTTCCTCCACTAGAAAGTAGAATTAGCATGGAAGACAAGAGTATGATCCCATTAATTAATCATAATGTCATGAAAAGCTATAATATCAACCACTTCAATAATAGTTGCTTCAATAATACTAATCAAATTCAAAATTCTAAGGTTGAGGACTTTTTTGGGTTTGGAAATCATGGACAAGGGGAAAACTTAAGAATGGGAGAATGGGATTTTGAGGGTTTGATGCAAGATATGTCCTATTTTCCTACCCTTGATTTTCAAGTTTAA 1023 0.3392 MRKPDLITGINNKMNNNNNNNNISKNKLRKGLWSPEEDEKLVRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNNNNTSQSPSDSSDQQIDVFDMKNNMIMPINEQDLMTLCMDNSSSSTSSSSIQSMQMHAMVLSDQFDHPFSLLSNINNIPTCLTQDGNMVVDDIGLHSDDHYGILEANNKMGLLENDFELPPLESRISMEDKSMIPLINHNVMKSYNINHFNNSCFNNTNQIQNSKVEDFFGFGNHGQGENLRMGEWDFEGLMQDMSYFPTLDFQV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00533 340 CDD SANT 85 128 IPR001005 -
Car05g00533 340 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Car05g00533 340 SMART sant 29 79 IPR001005 -
Car05g00533 340 SMART sant 82 130 IPR001005 -
Car05g00533 340 CDD SANT 33 77 IPR001005 -
Car05g00533 340 PANTHER MYB DOMAIN PROTEIN 55 16 340 - -
Car05g00533 340 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Car05g00533 340 Pfam Myb-like DNA-binding domain 83 127 IPR001005 -
Car05g00533 340 Gene3D - 30 82 - -
Car05g00533 340 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Car05g00533 340 PANTHER TRANSCRIPTION FACTOR MYB83 16 340 - -
Car05g00533 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Car05g00533 340 Gene3D - 84 157 - -
Car05g00533 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 77 IPR017930 -
Car05g00533 340 SUPERFAMILY Homeodomain-like 28 124 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00533 Car-Chr5 25290749 25294367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00533 1 340 MYB Transcription Factor Family AT3G08500 47.578 3.32e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g00533 Myb_DNA-binding 7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00533 K09422 - gmx:100813660 363.999