Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00525 ATGGCAGCTGTGCGAGAAATTTCTGCAACTTTGCTCTCTCGCTCAAAACCTCACACCTCTCTTTTTCGTCGTCTCTTCTTTCGTAGAAAGACTTCCAAGATTTTTGTGAAAGGATTAGCCTTTTCTACTACAGAGGAGAAATTAGCCGAAGCTTTTTCTCAATACGGCAACGTTCTCAAAGCTGATATAGTATTGAATAAAGCCAAAAATAGATCCAAAGGTTTTGGATATGTAACTTTTGCTGAGGAGGAAGAAGCCCGCAAGGCACAAATTGGCATGAATAGAAAGTCAGTCTCAGAAGGTAAGAAGGCACCAAACTTAGGGAGGGAAGGAGCCGCACCTCGTCCGAGCACTTCTGGTTGTTAA 366 0.429 MAAVREISATLLSRSKPHTSLFRRLFFRRKTSKIFVKGLAFSTTEEKLAEAFSQYGNVLKADIVLNKAKNRSKGFGYVTFAEEEEARKAQIGMNRKSVSEGKKAPNLGREGAAPRPSTSGC 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00525 121 Gene3D - 12 107 IPR012677 -
Car05g00525 121 PANTHER RNA RECOGNITION MOTIF 10 98 - -
Car05g00525 121 SUPERFAMILY RNA-binding domain, RBD 30 98 IPR035979 GO:0003676
Car05g00525 121 PANTHER TRANSFORMER-2-RELATED 10 98 - -
Car05g00525 121 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 103 IPR000504 GO:0003723
Car05g00525 121 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 98 IPR000504 GO:0003723
Car05g00525 121 SMART rrm1_1 33 108 IPR000504 GO:0003723
Car05g00525 121 MobiDBLite consensus disorder prediction 89 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00525 Car-Chr5 25149537 25151697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00525 26 98 Eukaryotic Initiation Factors Gene Family AT1G22760 38.356 6.30e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00525 - K13195 gmx:100527061 130.568