Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00522 ATGACTGCTATTGAAGAAATGGCTGGAATGGATGTGTTAAGTAGTGACAAAACAGAAACATTAACTCTTAACAAGCTTACAATGGACAAGGATATGATTGAGGTTTTTGCCAAAGGTGTTGACAAGGATGTGACTGTACTTATGGCTGCAAGAGCATCAAGACTGGAGAACCAGGATGCAATCGATTGTGCAATCGTTTCAATGTTGGCAGACCCAAAGGAGGCACGAGCCGGAATAAAAGAAGTTCACTTCCTTCCATTCAATCCAACTGATAAAAGAACTGCACTTACATACATTGATCCTGCTGGTAATATGCACAGGGTAAGCAAAGGTGCACCAGAGCAGATTCTCAATCTTGCACATAACAAGGCAGAAATTGGACAGAAGATTCACACAACGATTGACACGTTTGCAGAACGCGGACTTCGTTCTCTTGGAGTTGCTAGACAGTGTCAAAATGATCACTGGTATGTGATAGTTTCTACCACTAGAGACTTGTCCTTGTGCTATTTTTCGGGTGATCAACTTGCAATAGGAAAGGAAACAGGAAGGCGTCTAGGGATGGGGACTAGCATGTATCCTTCTTCATCATTGCTTGGTGACAATAAAGATCAATTAGGTGCTATCTCTCTTGATGATCTCATTGAGAATGCTGATGGTTTTGCTGGTGTCTTTCCTGGTAAGCAAGAGCAAGCACTTATCTTAACACATAGAAACTCTAAGTTAATATCTATCAACTACTCTTGTGTCTTATCTATTTCTGACATGGTTCCCTCAGAGCACAAGTATGAAATTTTGAAGAGGTTACAAGCTAGAAAGCACATTTGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCTTTAAAGATAGTTGACATTGGTATTGCAGTAGCAGATTCTACAGATGCTGCAAGAAGTACTTTAGTCCAAGGTGCTGTCAATTTCCTCCCCAAGACCGAGTCACCCAGAAAGTACAACTCATCATTTTCATCAGTGGCAGATCCAAGACTCTGGCTCAAGTGGTGCAAAATATTAAACTTTGATTAA 1050 0.4105 MTAIEEMAGMDVLSSDKTETLTLNKLTMDKDMIEVFAKGVDKDVTVLMAARASRLENQDAIDCAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYIDPAGNMHRVSKGAPEQILNLAHNKAEIGQKIHTTIDTFAERGLRSLGVARQCQNDHWYVIVSTTRDLSLCYFSGDQLAIGKETGRRLGMGTSMYPSSSLLGDNKDQLGAISLDDLIENADGFAGVFPGKQEQALILTHRNSKLISINYSCVLSISDMVPSEHKYEILKRLQARKHICGMTGDGVNDAPALKIVDIGIAVADSTDAARSTLVQGAVNFLPKTESPRKYNSSFSSVADPRLWLKWCKILNFD 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00522 349 Gene3D - 26 152 IPR023299 GO:0000166
Car05g00522 349 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 20 165 IPR023299 GO:0000166
Car05g00522 349 PANTHER CALCIUM-TRANSPORTING ATPASE 259 308 - -
Car05g00522 349 SUPERFAMILY HAD-like 2 307 IPR036412 -
Car05g00522 349 PANTHER PLASMA MEMBRANE ATPASE 259 308 - -
Car05g00522 349 PANTHER PLASMA MEMBRANE ATPASE 1 150 - -
Car05g00522 349 PANTHER CALCIUM-TRANSPORTING ATPASE 170 229 - -
Car05g00522 349 Gene3D - 1 10 - -
Car05g00522 349 PANTHER PLASMA MEMBRANE ATPASE 170 229 - -
Car05g00522 349 Gene3D - 11 25 IPR023214 -
Car05g00522 349 Gene3D - 172 229 IPR023214 -
Car05g00522 349 Gene3D - 259 307 IPR023214 -
Car05g00522 349 PRINTS H+-transporting ATPase (proton pump) signature 130 148 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car05g00522 349 PRINTS H+-transporting ATPase (proton pump) signature 251 267 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car05g00522 349 PRINTS H+-transporting ATPase (proton pump) signature 279 295 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car05g00522 349 PANTHER CALCIUM-TRANSPORTING ATPASE 1 150 - -
Car05g00522 349 PRINTS P-type cation-transporting ATPase superfamily signature 14 28 - -
Car05g00522 349 PRINTS P-type cation-transporting ATPase superfamily signature 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00522 Car-Chr5 25115213 25117711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00522 1 307 Primary Pumps ATPases AT5G62670 64.072 3.35e-133 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00522 K01535 - cam:101491988 640.958