Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00518 ATGTGCACTTTGAGTGCTAAGTTCTGTTTTTATAATTTGCCTTGCAGACTTGCGACCGAGATTCATGAGGATTTGTACCATTTGATAAAGAAGATTGTTTCAATCCATAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGACTCATCCTAGTTAAGAGCAGAATCCTTCGACTGGCTCGTTATTACAAGAAAACTAAGAAGCTTCCCCCTGTGTGGAAATAtgtaagtgtgtttggagtctcaatcttgtga 264 0.3561 MCTLSAKFCFYNLPCRLATEIHEDLYHLIKKIVSIHKHLERNRKDKDSKFRLILVKSRILRLARYYKKTKKLPPVWKYVSVFGVSIL 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00518 87 CDD Ribosomal_S15p_S13e 23 78 IPR000589 GO:0003735|GO:0005840|GO:0006412
Car05g00518 87 Pfam Ribosomal protein S15 21 79 IPR000589 GO:0003735|GO:0005840|GO:0006412
Car05g00518 87 ProSitePatterns Ribosomal protein S15 signature. 35 65 IPR000589 GO:0003735|GO:0005840|GO:0006412
Car05g00518 87 SUPERFAMILY S15/NS1 RNA-binding domain 21 78 IPR009068 -
Car05g00518 87 SMART Ribosomal_S15_2 18 85 IPR000589 GO:0003735|GO:0005840|GO:0006412
Car05g00518 87 Gene3D - 20 83 - -
Car05g00518 87 PANTHER RIBOSOMAL PROTEIN S15P/S13E 17 81 IPR023029 -
Car05g00518 87 PANTHER 40S RIBOSOMAL PROTEIN S13 17 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00518 Car-Chr5 24991279 24992621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00518 17 87 Cytoplasmic Ribosomal Protein Gene Family AT3G60770 78.873 6.58e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00518 K02953 - mnt:21408265 114.005