Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00508 ATGTATCCACAAAGTTTAGTTCTTTCACTTTTCACCATATTAGTGTCATTTGGCTTGTGTTTTGGCTCTTACATAGTGGAAACAAATTATCAAAATGAACAATTTGGTTTCATGAAAAGGGCTAATCATCAATCTCACGCACCGTTGCAATCTAAAGAAATAATTAATGTTGACGACTATGAAGCCAAAGCTAACGATGGACAAATTGATAACGAGGCATTTGAAAAGGCATGGAATGAGGCATGTTCTAAAGGAGGTGTTCTTGTGGTACCTCAAAATAGTGTCTATCATCTAAAGCCAATAATATTTTCAGGGCCATGTCAACCCAATACTGAATTAAAGATCTATGGAACAATCAAAGCATGGCCTAAAATATCAGCATATGAAAAAGATAGAAGTCTTTGGATTATGTTTGATAATGTCACAAATCTCATAGTTGATGGTGGTGGCACCATTGATGGCAATGGAAGAATATGGTGGGAGAATTCTTGCAAAGTCAACGAAAGCCTCGCTGTGACTTTCAATGAATGCAACAACTTGAGAGTGGAAAACATGAAGTTCAAAAATGCACAACAAATGCATATAAGGTTTCAGCATTGCAATAATGTTGGGGCTTCAAATCTAATAGTAAAAGCACCAGGGCACAGCCCCAACACTGATGGAATTCATGTCACACATTCACAAAATGTTATCATAAGCAATAGCATCATTGGGACAGGTGATGATTGTATTTCAATAGTAAGTGGGTCCAAAAATATTCGAGCCACAGATATTATTTGTGGGCCAGGACATGGAATCAGCATTGGAAGTTTAGGAGAAGGTAACTCAGAAGCTAAAGTGTCCAATGTGCAAGTGAACAGAGCTACATTTAAAGGAACCACTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTCTGGCTATGCAAAAGACATCAAATTTATCAACATAGCTATGCAAAATGTGACAAATCCCATAATCATAGATCAAAACTATTGTGACCAGAAAAAGGCATGTCATGAGCAGGACTCAGCAGTAGAATTGAGCAACGTTGTGTACCAAAACATTAAAGGAACAAGTGCTTCAGAAGTGGCAATCAAATTTGAATGTAGCAAAACTGTCCCATGCAAAGGAATTCATGTGCAAGATGTGATTTTAACACCACAAGGTTGTAATGGCACCATTGCAACATGTGAGAATGTTAGATTTACAAACAGTGGAATGTTCTATCCTAAATGTCATTCTTGA 1248 0.3734 MYPQSLVLSLFTILVSFGLCFGSYIVETNYQNEQFGFMKRANHQSHAPLQSKEIINVDDYEAKANDGQIDNEAFEKAWNEACSKGGVLVVPQNSVYHLKPIIFSGPCQPNTELKIYGTIKAWPKISAYEKDRSLWIMFDNVTNLIVDGGGTIDGNGRIWWENSCKVNESLAVTFNECNNLRVENMKFKNAQQMHIRFQHCNNVGASNLIVKAPGHSPNTDGIHVTHSQNVIISNSIIGTGDDCISIVSGSKNIRATDIICGPGHGISIGSLGEGNSEAKVSNVQVNRATFKGTTNGVRIKTWQGGSGYAKDIKFINIAMQNVTNPIIIDQNYCDQKKACHEQDSAVELSNVVYQNIKGTSASEVAIKFECSKTVPCKGIHVQDVILTPQGCNGTIATCENVRFTNSGMFYPKCHS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00508 415 ProSitePatterns Polygalacturonase active site. 257 270 IPR000743 GO:0004650|GO:0005975
Car05g00508 415 Pfam Glycosyl hydrolases family 28 88 403 IPR000743 GO:0004650|GO:0005975
Car05g00508 415 PANTHER - 36 414 - -
Car05g00508 415 Gene3D - 39 413 IPR012334 -
Car05g00508 415 SUPERFAMILY Pectin lyase-like 45 414 IPR011050 -
Car05g00508 415 PANTHER POLYGALACTURONASE 36 414 - -
Car05g00508 415 SMART pbh1 177 226 IPR006626 -
Car05g00508 415 SMART pbh1 250 270 IPR006626 -
Car05g00508 415 SMART pbh1 227 248 IPR006626 -
Car05g00508 415 SMART pbh1 309 330 IPR006626 -
Car05g00508 415 SMART pbh1 280 301 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00508 Car-Chr5 24640612 24645283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00508 1 413 Glycoside Hydrolase AT3G07970 54.072 1.36e-153 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00508 K01184 - gmx:100796446 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g03004 06 51433738 51437791 Car05g00508 05 24640612 24645283 PCT
Car07g02537 07 48269604 48271464 Car05g00508 05 24640612 24645283 PCT