Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00507 ATGGAAGCAGCAGTAATCGACGCCGGCTCCTACCTCCTCAAAGCCGGTTTCGCAATTCCTGATCAAACTCCCGCTATGATAATTCCTAGCCAGATGAAGCGAATGGTTGATGATAAATCATCAGTGGATGATGATGGTAGTGGTCAGTTAGTGGTGGATGAGGTTTCTGTTGATCCGGTGGTGCGAGGTTATGTTAGAGATTGGGATGCTATGGAGGATTTGTTGCATTATGTTTTGTATACTGGACTTGGATGGGAAATTGGCAATGAAGGACAAATATTGTTTACGGATCCACTTTGTACCCCAAAGGCTAACAAAGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCATCGGAACAGGCAGTGTTGTCTCTCTATGCTGTGGGAAGGATCTCTGGATGCACAGTTGATATTGGTCATGGAAAAATAGATATTGCTCCAGTGATTGAGGGTGCGGTTAACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTACCGATCTAACTAATTTTCTGGCTCAAGAACTTGGCAAATCCAATCCGCTAGTGAATATCAGCATTTCTGATGTTGAGAAAATAAAACAGCAATATTCATGTTGTGCTGAAGATGACTTAGCTTACCAGAAGACTGAAAATTCTTGTCCCGTGGAGACGCATACCCTTCCTGATGGACAGGTGATAACAATTGGAAGAGAAAGATATACAGTTGGTGAGGCTTTATTCCAGCCAAGTCTATTGGGTTTAGAGGCTCATGGCATTGTAGAGCAGCTTGTCCGTACTATTTCAACGGTGACATCTGATAATCATCGGCAACTTCTAGAAAATACTGTGGTTTGTGGCGGCACTTCTTTTATGACTGGTTTTGAAGAGAGATTTCAAAAGGAATCTTGGCTAAGTTCATCAGCTGTTCGACCTACCTTGGTTAAGCCTCCGGAATATATGCCGGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTGGTTTTTCCTCAAAATCAGCATGTTACTAAGGCAGACTATGATGAAAATGGACCTTCCATTGTTCACCGGAAGTGCTTCTAA 1101 0.4242 MEAAVIDAGSYLLKAGFAIPDQTPAMIIPSQMKRMVDDKSSVDDDGSGQLVVDEVSVDPVVRGYVRDWDAMEDLLHYVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGTDLTNFLAQELGKSNPLVNISISDVEKIKQQYSCCAEDDLAYQKTENSCPVETHTLPDGQVITIGRERYTVGEALFQPSLLGLEAHGIVEQLVRTISTVTSDNHRQLLENTVVCGGTSFMTGFEERFQKESWLSSSAVRPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHVTKADYDENGPSIVHRKCF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00507 366 Pfam Actin 2 366 IPR004000 -
Car05g00507 366 Gene3D - 128 329 - -
Car05g00507 366 PANTHER BNACNNG31150D PROTEIN 1 365 - -
Car05g00507 366 Gene3D - 5 360 - -
Car05g00507 366 Gene3D Actin; Chain A, domain 4 170 257 - -
Car05g00507 366 PRINTS Actin signature 23 32 IPR004000 -
Car05g00507 366 PRINTS Actin signature 105 118 IPR004000 -
Car05g00507 366 PRINTS Actin signature 130 149 IPR004000 -
Car05g00507 366 PRINTS Actin signature 222 238 IPR004000 -
Car05g00507 366 SMART actin_3 1 366 IPR004000 -
Car05g00507 366 SUPERFAMILY Actin-like ATPase domain 2 143 IPR043129 -
Car05g00507 366 PANTHER ACTIN 1 365 IPR004000 -
Car05g00507 366 SUPERFAMILY Actin-like ATPase domain 136 366 IPR043129 -
Car05g00507 366 CDD NBD_sugar-kinase_HSP70_actin 4 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00507 Car-Chr5 24631013 24638456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00507 1 366 Cytoskeleton Gene Families AT3G18780 37.368 1.05e-70 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00507 K16615 - gmx:100794153 660.988