Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00496 ATGGATGATTACTATTGCAAAGCATACCCCAACATTTATTCCACCGATTACACTACAGAAATCACTCCATCTCTCAATTGCAATTACTTCAATATAGAGTTTGAGTACACAAATATGTACGTTTTAAATGCTAGAAAGTTTCAAACTTTTTGTGACACTGATGTTCACACTTTTTCAAATGTCTCAATAGATAATAAAATAATGCAAGAATCTACTATTATTCCATGGCTTTCTAAAATTAATGTTCCTCAAGATGCTTTTCGGTTGGTTGTGGCGAATATCTTGGAATGTGCTAATGATATGGTTAGAAGTTCAAGGAAAAACAAAAACCTTAGGGTTTTTTCGATTCGAGTGGATTTTGTTGTTACAAGGGCTAGtgaagatgaaagtgatgaagactacgactacaaaaatgaagatgaagaagacgaagagagtgtttttgaagatgaaatggaagttgaagaagaagaAAATAATGGGTTGGTTCCCGCGGCTAGATCGTGTATTGAGGAATTGGAGATGGTGAAAGTTGAAGAAGTTGGAAAATGTCCAATTTGTTTTGAAGATTTTAATGTTTGTGTTCGAATGCCATGTTTGCATATGTTTCATATGAATTGTATTCGTGATTGGTTGGAGGTAGGAAATTCTTGTCCTTTGTGTAGGTTTAAAATGCCCACTAACAAAATTGAATAA 696 0.2931 MDDYYCKAYPNIYSTDYTTEITPSLNCNYFNIEFEYTNMYVLNARKFQTFCDTDVHTFSNVSIDNKIMQESTIIPWLSKINVPQDAFRLVVANILECANDMVRSSRKNKNLRVFSIRVDFVVTRASEDESDEDYDYKNEDEEDEESVFEDEMEVEEEENNGLVPAARSCIEELEMVKVEEVGKCPICFEDFNVCVRMPCLHMFHMNCIRDWLEVGNSCPLCRFKMPTNKIE 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00496 231 ProSiteProfiles Zinc finger RING-type profile. 184 222 IPR001841 -
Car05g00496 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 230 IPR013083 -
Car05g00496 231 PANTHER F6A14.12 PROTEIN-RELATED 75 227 - -
Car05g00496 231 Coils Coil 138 158 - -
Car05g00496 231 SUPERFAMILY RING/U-box 183 227 - -
Car05g00496 231 SMART ring_2 184 221 IPR001841 -
Car05g00496 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 75 227 - -
Car05g00496 231 Pfam Ring finger domain 183 222 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00496 Car-Chr5 24430155 24430850 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00496 144 228 C3H Transcription Factor Family AT5G01980 40.625 2.32e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00496 - - cam:101499491 378.252