Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00493 ATGGATGATTACTATTGCAAAGCATACCCTAATATTTATTCCACCGATGACATTACAAAAATTATTTCATCATCATGTCCCAATTGCAATTACTTCAATATAGAGTTTGAGTACACAAATATGTATGTATTAAATGCTAGAAAGTTTCAAACTTTTTGTGATACTGATGTTCACACTTTTTCAAATGTCTCCATGGATAATAAAATAATGCAAGAATCTACTATTATTACATGGCTTTCTAAAATTAATGTTCCTCAAGATGCTTTTAGGTTGGTTGTGGCGAATATCTTGGAATGTGCTAATGATATGGTTAGAAGGTCAAAGAAAAACAAAAACCAAAGGGTTTTTCCAATTCGAGTCGATTTTGTTGTTACAAGGGCTAGtgaagatgaaagtgatgaagacgacgattacgaaatcaaagatgaagaagacgaagagagtgttagttttgaagatgaaatggaagttgaagaagaagaAAATAATGGGTTGGTTCCAGCGGCTAAGTCATGTATTGAGGAGTTGGAGATGGTGAAAGTTGAAGAAGTTGGAAAATGTCCAATTTGTTTTGAAGATTTTAATGTTTGTGTTCGAATGCCATGTTTGCACATGTTTCATATGAATTGTATTCGTGATTGGTTGGAAGTAGGAAATTCTTGTCCTTTGTACTGTCCACCACTTTATTTTCTCCAAAATCATGGTTGTGGTGCATAG 717 0.2887 MDDYYCKAYPNIYSTDDITKIISSSCPNCNYFNIEFEYTNMYVLNARKFQTFCDTDVHTFSNVSMDNKIMQESTIITWLSKINVPQDAFRLVVANILECANDMVRRSKKNKNQRVFPIRVDFVVTRASEDESDEDDDYEIKDEEDEESVSFEDEMEVEEEENNGLVPAAKSCIEELEMVKVEEVGKCPICFEDFNVCVRMPCLHMFHMNCIRDWLEVGNSCPLYCPPLYFLQNHGCGA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00493 238 MobiDBLite consensus disorder prediction 128 150 - -
Car05g00493 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 223 - -
Car05g00493 238 Pfam Ring finger domain 186 223 IPR001841 -
Car05g00493 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 229 IPR013083 -
Car05g00493 238 SMART ring_2 187 224 IPR001841 -
Car05g00493 238 ProSiteProfiles Zinc finger RING-type profile. 187 223 IPR001841 -
Car05g00493 238 SUPERFAMILY RING/U-box 186 223 - -
Car05g00493 238 PANTHER F6A14.12 PROTEIN-RELATED 59 223 - -
Car05g00493 238 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00493 Car-Chr5 24391969 24392899 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00493 150 223 C3H Transcription Factor Family AT5G01980 40.000 1.39e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00493 - - cam:101499491 401.364