Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00471 ATGGCGGAACCTCGCCCACCTAAGCGTCCCAAAATTAGCAGGGGGGATGATGATTATATGCCTGGAAACATTCTAGAGATTGAGCTTTATAATTTCATGACATTTGATTACTTAAAATGTAAACCTGGGCCTCGGTTGAACCTCGTAATTGGGCCCAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGCCTCTGTGGAGAGCCCCAGTTGCTTGGGCGAGCCACGAGTATTGGGAACTTTGTGAAGCGGGGGGAAGAGTCTGGGCACATTAAGGTTACCTTAAGAGGGGACCATAAAGAGGAGCATATTACGATTATGCGTAAAATAAATATTAGCAATAAGTCTGAATGGTTCTTAAATGAAATTGTTGTGCCCAAAAAGGATGTCGCTGAAACCATTCAGAGGTTTAACATCCAAGTAAATAATTTGACTCAATTTTTACCGCAAGACAGGGTCTGTGAGTTTGCAAAGTTAACTCCGGTGCAACTTTTGGAAGAGACCGAAAAGGCTGTTGGTGATCCACAGCTTCCAGAGCAACATCGTGCACTAATTGATAAAAGTCGTGCATTGAAGCATGTTGAACTGTCTCTTGAGAAAAATGAAGGAACTTTAAATCAGCTGAAGGAACATAATGCTGAATTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGATGAACTTCTTGCCAAGGCTGATTCAATGAAAAAGAAATTGCCATGGCTGAAGTATGATATGAAGCAGGCAGAATATCGTGAAGCTAAGGAGCGTGAGAAGACTGCAGCAAAGGCATTTGAGGAAGCTGCAAAATTATTAAATGAACTTAAAGAACCTATTAAGAAACAAAAAGACGAGAAAGCTGCATTAGATGCAAAATGCAAAAAGGTCAACAGCCGAATAAATGAGAATGCCAAAAAGAGAATGGAACTTATTGAGAAAGAGAACCAATTGGACGTGGACTTACAAGGAAAGTACAATGAGATGGAAGGGTTGAGGAGGGAGGAAGAAACTCGGCAACATAAAATTAGAAAAGCTAGGGAGGAACTTGCTGCTGCGGAACATGAACTTGAGAGTCTAGACCCTTATGTACCCCCCAAGGATGAACTTAAAAAACTGAGAGAAGAAATTCTGGAGTTGGATATTTCTGCTGATCAAGTGAGAGAGAATAAGTCAGAAGCAGAAAAGAAAATAATGGACAAAAACTTCTCCTTGAAGAAGTGTAAGGACAGGTTGACAGAAATGAATAATAAAAGTAACAAGTGTTTGAATGCATTGCAAAGATCCGGGGTTGATAAAATTTTTGACGCTTATAACTGGGTCCAAGCTCATCGCCATGAATTCAACAAGGAGGTTTATGGCCCAGTTTTAGTTGAGGTCAATGTCTCAGACCAGTCTCATGCTGGATATCTAGAGGGTCAAGTTGGTTGGTACATTTGGAAGTCTTTCATAACACAGGATTCTCGTGATAGGGACCTTTTGGCAAACAACCTACGACACTATGATGTACCAGTTTTAAATTATACTGGTCGTGATAGCCAACAAAAAGAGCCTTTTGAAATTTCTGCTGATATGCGTGCTGTTGGCATCTACTCCCGTTTGGACCAAATTTTTGATGCTCCTTTTGCTGTCAAGGAGGTGTTGATTAGCCAATCTAATCTTGATCATTCATTTATTGGATCGAAAGAAACTGATCAGAAATCTGACGAGGTCCCAAAATTGGGAATTACTAGTTTATGGACACCAGAAAATCACTACAACTGGTCTAAGTCTAGATATGGAAATCACCTCTCAGCAGTTGTTGAACAAGTGAAACGCCCGCAACTTCTTCTGAATAATTTAAATGTGAGGGACATTGAGAATCTGAGCTCCCAGCAAAGGGAGCTTCAAGAAGCCATTGCTTCCTTGGAAGAAAGTGTCAAAAGGTTTCAAGACGAGGAAAAAAGCTTCAGGAAGCAGGCTGCTAATCTTCGTAAACAGAAGGAGGACATTAGTAATGCGGCACAGAATGAGCAAAAAAAACGACAAGCAATTATTAGGCGTATTGAACAAAAGAAAGGGATATTGAAATTGATGGAGGAGCAGGATGATTTAGATACTGAGTTAGCGAAGCTTGTTGATCAGGCAACAAAATGTAACATTCAACGATTTCATAACGCAATAAAAATTAAGGATCTTCTTGTTGAAGCTGCGGGTTACAGACGGAGTTTTGTTGAACAACGCATGGCTTGCATTGAATTGGATGCAAAGATTGGAGAAATGGAGGCCAATCTGAAGCAGCATGAAAATTGTGCTCTGCAAGCATCATTGCACTTTAATAACTCAAAGAAAGAGGCTGAAGAATGTAGACAGAAGCTTACAGATTTATTGAACTATGCTAAGTCAGTTGCCCGACTTACACCTAACCTAGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAGTTGGAAGCAGCTATTCAAGATACCATTTCTCAAGCCAATTCAATCCTTTTTGTCAATAGTAACATATTGCAACAATATCAGGATCGTCAAAGAAAGATTGAAGATCTTGCAACAAAACTTGATGCAGACAAGGTGGAATCTAGAAGGTGTCTAGCCGAATTGGATAACATTAAGGGAAAATGGCTTCCAACTCTGAGAAACCTTGTGGCACAAATAAATGAAACTTTTAGTCGAAATTTTCAACAGATGGCTGTTGCCGGAGAAGTTTCACTAGATGAGCACGATATGGACTTTGATAAATTTGGAATACAAATAAAAGTCAAATTCAGAGAAAGTGGACAGCTTGAAGTTCTAAGCGCCCATCATCAATCTGGAGGGGAGCGTTCGGTTTCAACTATTGTTTATCTTGTTTCACTCCAAGATCTTACAAACTGTCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTTCAGCAACTAGTGAGAGCAGCTAGCAAGCCAAATACACCACAGTGTTTCTTACTTACCCCAAAGTTGCTACCAGATCTGCAATATAGCGAGGCATGCAGTATATTGAATGTAATGAATGGCCCTTGGATTGAGCAACCATCAAAGGTCTGGACCACTGGTGATCGATGGAGTATCATTACCGGACATATCGGAGAGACCATATGTTAA 3159 0.4027 MAEPRPPKRPKISRGDDDYMPGNILEIELYNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGNFVKRGEESGHIKVTLRGDHKEEHITIMRKINISNKSEWFLNEIVVPKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALIDKSRALKHVELSLEKNEGTLNQLKEHNAELEKDVERVRQRDELLAKADSMKKKLPWLKYDMKQAEYREAKEREKTAAKAFEEAAKLLNELKEPIKKQKDEKAALDAKCKKVNSRINENAKKRMELIEKENQLDVDLQGKYNEMEGLRREEETRQHKIRKAREELAAAEHELESLDPYVPPKDELKKLREEILELDISADQVRENKSEAEKKIMDKNFSLKKCKDRLTEMNNKSNKCLNALQRSGVDKIFDAYNWVQAHRHEFNKEVYGPVLVEVNVSDQSHAGYLEGQVGWYIWKSFITQDSRDRDLLANNLRHYDVPVLNYTGRDSQQKEPFEISADMRAVGIYSRLDQIFDAPFAVKEVLISQSNLDHSFIGSKETDQKSDEVPKLGITSLWTPENHYNWSKSRYGNHLSAVVEQVKRPQLLLNNLNVRDIENLSSQQRELQEAIASLEESVKRFQDEEKSFRKQAANLRKQKEDISNAAQNEQKKRQAIIRRIEQKKGILKLMEEQDDLDTELAKLVDQATKCNIQRFHNAIKIKDLLVEAAGYRRSFVEQRMACIELDAKIGEMEANLKQHENCALQASLHFNNSKKEAEECRQKLTDLLNYAKSVARLTPNLEKEFLEMPTTIEELEAAIQDTISQANSILFVNSNILQQYQDRQRKIEDLATKLDADKVESRRCLAELDNIKGKWLPTLRNLVAQINETFSRNFQQMAVAGEVSLDEHDMDFDKFGIQIKVKFRESGQLEVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTTGDRWSIITGHIGETIC 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00471 1052 Coils Coil 621 676 - -
Car05g00471 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 18 1047 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Car05g00471 1052 CDD ABC_SMC5_euk 925 1027 - -
Car05g00471 1052 Coils Coil 201 235 - -
Car05g00471 1052 Coils Coil 282 302 - -
Car05g00471 1052 Coils Coil 372 399 - -
Car05g00471 1052 Pfam RecF/RecN/SMC N terminal domain 24 993 IPR003395 -
Car05g00471 1052 Coils Coil 257 277 - -
Car05g00471 1052 Coils Coil 331 358 - -
Car05g00471 1052 Gene3D - 841 1022 IPR027417 -
Car05g00471 1052 CDD ABC_SMC5_euk 22 179 - -
Car05g00471 1052 Gene3D - 23 230 IPR027417 -
Car05g00471 1052 Coils Coil 841 861 - -
Car05g00471 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 1003 IPR027417 -
Car05g00471 1052 Coils Coil 690 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00471 Car-Chr5 23355599 23383937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00471 5 1041 Structural Maintenance of Chromosomes family AT5G15920 62.006 0.0 1301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00471 K22803 - gmx:100778678 1634