LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g00466	ATGGATGGTCTTATACAACAGATCTTATACTTACAGAGGCTAGATCCTGAAGATGAGATGCCTGCAACTGGAGGTTCAATGAATCCAGTAAGAGCACTGGGCCCAACAATTGCTGCAAACAACTTCAGAGACATATGGTTTTATCTCATAGCTCCTATTCTTGGAGCTCTAATTGGGGCAGGTGCATACATTGTTGTCAAATTGCCTGATGAAGAATTTAACTGA	225	0.4133	MDGLIQQILYLQRLDPEDEMPATGGSMNPVRALGPTIAANNFRDIWFYLIAPILGALIGAGAYIVVKLPDEEFN	74

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g00466	74	PANTHER	MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER	21	74	-	-
	Car05g00466	74	PANTHER	AQUAPORIN NIP2-1	21	74	IPR034294	-
	Car05g00466	74	SUPERFAMILY	Aquaporin-like	21	72	IPR023271	-
	Car05g00466	74	Gene3D	Glycerol uptake facilitator protein.	19	72	IPR023271	-
	Car05g00466	74	Pfam	Major intrinsic protein	20	63	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g00466	Car-Chr5	23087513	23089464	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g00466	21	72	Major Intrinsic Protein MIP	AT1G80760	75.000	2.15e-22	85.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g00466	K09874		-	cam:101515590	84.7297

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