LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g00465	GTTGCAGCAGAGTTTATAGGCACATTCATTCTAATGTTTGCTGGAATGGGAAGTGCAATAGAGAACGAAAAGGTTGAAAATTCAGAGACACTAATTGGATGTGCTGGAGCTAGTGGACTTGCTGTTATGATCATAATTCTATCAACTGGTCATATCTCCGGTGCTCATCTCAATCCTGCTGTACCTGTGTATATTGGTGCACAAATATTGGCATCAATATGTGCTGCATTTTCTCTGAAAGTGATTTTTCATCCATTCATGAATGGTGGAGTGACGGTTCCTTCAGTAGCAATTGGTGAAGCTTTTGCATTAAAATTCATTATTGGCTTTAATCTCATGTTTGTTGTCACTGCTGTTGCCACCGACACAAGAGTTATGGGAGAATTTGCGGGAATCACGGTGGAAGCCACCGTCATGCTCAACATACTCATAGCCGGGGTATGTTCAACGCCTGCAACTGGAGGTTCAATGAATCCAGTAAGAGCACTGGGCCCAGCAATTGCTGCAAACAACTTCAGAGACATATGGTTTTATCTCATAGCTCCTATTCTTGGAGCTCTAATTGGGGCAGGTGCATACATTGTTGTCAAATTGCCTGATGAAGAATTTAACTGA	615	0.4211	VAAEFIGTFILMFAGMGSAIENEKVENSETLIGCAGASGLAVMIIILSTGHISGAHLNPAVPVYIGAQILASICAAFSLKVIFHPFMNGGVTVPSVAIGEAFALKFIIGFNLMFVVTAVATDTRVMGEFAGITVEATVMLNILIAGVCSTPATGGSMNPVRALGPAIAANNFRDIWFYLIAPILGALIGAGAYIVVKLPDEEFN	204

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g00465	204	SUPERFAMILY	Aquaporin-like	2	202	IPR023271	-
	Car05g00465	204	PRINTS	Major intrinsic protein family signature	38	62	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Car05g00465	204	PRINTS	Major intrinsic protein family signature	104	122	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Car05g00465	204	PRINTS	Major intrinsic protein family signature	139	161	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Car05g00465	204	PRINTS	Major intrinsic protein family signature	176	196	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Car05g00465	204	PANTHER	MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER	11	204	-	-
	Car05g00465	204	Pfam	Major intrinsic protein	61	193	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Car05g00465	204	Gene3D	Glycerol uptake facilitator protein.	1	203	IPR023271	-
	Car05g00465	204	PANTHER	AQUAPORIN NIP2-1	11	204	IPR034294	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g00465	Car-Chr5	23067947	23071264	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g00465	3	202	Major Intrinsic Protein MIP	AT1G80760	67.907	1.14e-96	281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g00465	K09874		-	gmx:100798410	280.796