Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00452 ATGAAACAAAGCAGTTATTATATCTCCAAGATGAAAATAGAAGTCAATGACTTCACTAGTGAAGAATATGAAGTGGCCGAAGCTCTTCTTTTAATGCAAACGTCATTCCAAAAGGAGAAGACTATGAAAATAGTTTTAAATGACAAAAAGATATTTGAAGAAACATATAGTAACGAAGTTTGTTCATCAAAAACCAATTCTCATGTTGCTATGAAAGATGAATACTGCCCTCCAGATATAAGAATCGGATTATCTACATATAATGCATCGTGCGGCTATAGTAGAAAAACCATAAGCCCTCAATACAAAAGAATTAAATTATCTAAATCTGTTGCATTGTGTAACTATAGTAAGGAATCCATACACCCTTCAGATAAAGCAATTGGATCCTCTACCGTTATTGCATCATATGGTGATAGCAGGGTATCTGTACACCCTCTAGATAACAACAACAATGTTATTATGGAAAATAATTTTCACTCTCCAGATATAGGAATTGGATCTTTTGCAGCATTAAGAAATTGTATTAGAAGATCCATACACCTTCCAAATAACAACAATATTATTATGGAAAATGAATACCACCGTCCAGATATACCGATAATTCAGGGATCTATACACCTTCAAGATAACTACAATGTTGCTACGGAAAATGAATATCACCCTCCAAATATACCGTCAATTCAAGGCCTATCAATTGATAATATTATTAGATGTAGTGTGCCTTTTGAGAAGAGCCTTCAAAAAAGTGATTTGGAGAAGAGTCAGAATAGATTGTTTTTGAGCAAAAAACATGTGGAAACATATTTTTTGCCTTTGTTGAGGGAAGGTGAAGACATTAAAAAAGGAATAGATGTCATTGTCTATGATATGCAAGGTACTATGTTCTCCATGACATTCAAGATTTGGGCTCAAAAATATTATGTTCTCATGAGAGGATGGAATAATTTCTTTGAAGTACACAAATTGCAAGTAGCAGATTGTGCCACGGTGTGGATGTTTCGTCATTTTGAAACGGGTAATTTGTGTTTTGCGATCAGTGTGAGAAGATCCCTCACCAAAAATGAAAAACTTCTTTAG 1080 0.3389 MKQSSYYISKMKIEVNDFTSEEYEVAEALLLMQTSFQKEKTMKIVLNDKKIFEETYSNEVCSSKTNSHVAMKDEYCPPDIRIGLSTYNASCGYSRKTISPQYKRIKLSKSVALCNYSKESIHPSDKAIGSSTVIASYGDSRVSVHPLDNNNNVIMENNFHSPDIGIGSFAALRNCIRRSIHLPNNNNIIMENEYHRPDIPIIQGSIHLQDNYNVATENEYHPPNIPSIQGLSIDNIIRCSVPFEKSLQKSDLEKSQNRLFLSKKHVETYFLPLLREGEDIKKGIDVIVYDMQGTMFSMTFKIWAQKYYVLMRGWNNFFEVHKLQVADCATVWMFRHFETGNLCFAISVRRSLTKNEKLL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00452 359 Gene3D - 240 357 IPR015300 -
Car05g00452 359 CDD B3_DNA 243 350 IPR003340 GO:0003677
Car05g00452 359 Pfam B3 DNA binding domain 243 346 IPR003340 GO:0003677
Car05g00452 359 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 212 351 IPR005508 GO:0003677
Car05g00452 359 SUPERFAMILY DNA-binding pseudobarrel domain 243 343 IPR015300 -
Car05g00452 359 ProSiteProfiles B3 DNA-binding domain profile. 244 350 IPR003340 GO:0003677
Car05g00452 359 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED 212 351 - -
Car05g00452 359 SMART B3_2 243 350 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00452 Car-Chr5 22697500 22698579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00452 240 346 B3 DNA Binding Superfamily AT4G03170 46.789 1.30e-22 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car05g00452 B3 8.4e-08 CL0405