Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00413 ATGAATGTGATTGATCAATGTTGGAGATTTAATCTTGAATGGAGGAAACATCGACAACAACTTGCCATGTGCTCAGTTGGATATGTAGGAAAAATGACAAACAACATAGGTAAAGACCTCGTTCATTATAAAGTTATTGATCTTAGTGACCACCCTTTAAACCCACAACCTGTAACTTTGAGATATCGAGCTTCTAACATTCAAGGTAAAGTTTGGATCACCTTCCAAAGGGACATGAACATTAGACTTGAGAGACCTCTTCTCATTAGTAGTTTCACTACCATTAAAGGTCGAGGTGTCGATGGTCGAAGTGTCAAATGCTCACATCACTAA 333 0.3814 MNVIDQCWRFNLEWRKHRQQLAMCSVGYVGKMTNNIGKDLVHYKVIDLSDHPLNPQPVTLRYRASNIQGKVWITFQRDMNIRLERPLLISSFTTIKGRGVDGRSVKCSHH 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00413 110 SUPERFAMILY Pectin lyase-like 1 101 IPR011050 -
Car05g00413 110 PANTHER PECTATE LYASE 1 101 - -
Car05g00413 110 Gene3D - 1 109 IPR012334 -
Car05g00413 110 PANTHER PECTATE LYASE 18-RELATED 1 101 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00413 Car-Chr5 20115078 20115410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00413 32 100 Polysaccharide Lyase AT5G09280 62.319 2.54e-25 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00413 K01728 - gmx:100811216 173.326