Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00412 | ATGGTGATGGGTCCCAATGGAAAGATAATGCCATTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTTATGCTTCAAAGATTTGGATTGACCATAACACGCTTTATGATTGCCAAGATGGTCGTCTTGATGTTACACGAGGTTCTACTGATGTGACAATCTCCAATAATTTGTTTAGGGAGCAAAATAAAGTTATGCTTCTTGGACACGATGATGGATTTGTAAGAGACAAGCACATGAAAGTAACAGTCGTATACAACTATTTTGAGCCTAATTGCCGCCAACGCACGCCtaagtaa | 300 | 0.3967 | MVMGPNGKIMPLGQVDGDAIRLVYASKIWIDHNTLYDCQDGRLDVTRGSTDVTISNNLFREQNKVMLLGHDDGFVRDKHMKVTVVYNYFEPNCRQRTPK | 99 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00412 | 99 | Gene3D | - | 5 | 99 | IPR012334 | - | |
| Car05g00412 | 99 | SMART | amb_all | 2 | 99 | IPR002022 | - | |
| Car05g00412 | 99 | Pfam | Pectate lyase | 12 | 98 | IPR002022 | - | |
| Car05g00412 | 99 | PANTHER | PECTATE LYASE | 1 | 99 | - | - | |
| Car05g00412 | 99 | PANTHER | PECTATE LYASE 18-RELATED | 1 | 99 | IPR045032 | GO:0030570 | |
| Car05g00412 | 99 | SUPERFAMILY | Pectin lyase-like | 14 | 99 | IPR011050 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car05g00412 | Car-Chr5 | 20114369 | 20114668 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car05g00412 | 2 | 99 | Polysaccharide Lyase | AT5G09280 | 73.469 | 3.91e-50 | 158 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00412 | K01728 | - | gmx:100811216 | 180.644 |