Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00394 ATGTCATCTCAACAATTTGATCATGGTGTCCACTTTTTCAAGGTTATTCTTCAAAAAAGCATTCAAGAAGGAAAACTGAAAGTGCCACAAAGTTTTGTGAGGAAGCATTGGCAAGGAATAACAAATCCTATTACTCTAAGGCTTCCAAATATGACTCAATGGGAAGTTTTATGGGAGAAAACTTGTGATTATGATGTTTGTTTTTGCAATGGTTGGAAAGAATTTGCAAATTATTTATCTTTGAGTGATTCACAATTTGTTGTGTTTAAATACGAAGAAAATTCACACTTTAATGTGATTGTATTTGATAAATGCGGCTTAGAAATAACATATCCTTTAAGAGAAACAAGTGAAAAATGTGAAGATGTTGATAAAAGTAATTATTCTCTGAAAATAATTGAGGATCCTTCATCGTCGCGGCGTAAAAGACCAAAATCTCCACCATCATCTTCTAAAGTTTATAAGAAGGTGAAAATAATCTCAAAAGAACGAAAGGAATGTAAGCATGAGAAGAGCAAAGTCCTAGCACATGCAAGATTTTATAGTTCTAAGCATATGGACAATGGTTGTAGCTGCGGTAATATTCTTAAGAGAAGTAGAGTTTTGCATGAGAAAGTGAAGAATGAATTCAATTGTGAGAAGGACTTCTTTATATCTGTGATCCACAAGACATACATTCAGAGAGATCTCTTGGTCATACCAAGAGATTTTTCAAAAATACATCTACACAGAATGGAAGGAAGAAATGCTACAATTTTTGTTGACCAAGACAGAACATGGAATGTTGACTTGAAGCTCACTAGAAATGATCAATTTACACTTAGTGGTGGTTGGAATAAATTCCGTCATCACAATAATGTGAAATATGGTGACAAAAGGAAATCACCGCTCCCTATTTTGAATGAAGGGTATACAAATAAACTACATTAG 930 0.3344 MSSQQFDHGVHFFKVILQKSIQEGKLKVPQSFVRKHWQGITNPITLRLPNMTQWEVLWEKTCDYDVCFCNGWKEFANYLSLSDSQFVVFKYEENSHFNVIVFDKCGLEITYPLRETSEKCEDVDKSNYSLKIIEDPSSSRRKRPKSPPSSSKVYKKVKIISKERKECKHEKSKVLAHARFYSSKHMDNGCSCGNILKRSRVLHEKVKNEFNCEKDFFISVIHKTYIQRDLLVIPRDFSKIHLHRMEGRNATIFVDQDRTWNVDLKLTRNDQFTLSGGWNKFRHHNNVKYGDKRKSPLPILNEGYTNKLH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00394 309 Gene3D - 6 105 IPR015300 -
Car05g00394 309 Gene3D - 196 292 IPR015300 -
Car05g00394 309 ProSiteProfiles B3 DNA-binding domain profile. 11 105 IPR003340 GO:0003677
Car05g00394 309 CDD B3_DNA 11 103 IPR003340 GO:0003677
Car05g00394 309 Pfam B3 DNA binding domain 216 291 IPR003340 GO:0003677
Car05g00394 309 Pfam B3 DNA binding domain 12 103 IPR003340 GO:0003677
Car05g00394 309 SMART B3_2 216 304 IPR003340 GO:0003677
Car05g00394 309 SMART B3_2 12 105 IPR003340 GO:0003677
Car05g00394 309 CDD B3_DNA 216 291 IPR003340 GO:0003677
Car05g00394 309 ProSiteProfiles B3 DNA-binding domain profile. 216 309 IPR003340 GO:0003677
Car05g00394 309 PANTHER B3 DOMAIN-CONTAINING 8 291 - -
Car05g00394 309 SUPERFAMILY DNA-binding pseudobarrel domain 211 291 IPR015300 -
Car05g00394 309 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 291 - -
Car05g00394 309 SUPERFAMILY DNA-binding pseudobarrel domain 7 104 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00394 Car-Chr5 19401681 19404292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00394 12 123 B3 DNA Binding Superfamily AT1G49475 40.179 5.29e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car05g00394 B3 6e-10 CL0405