Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00380 ATGGCTGGTCATCAAGTAATCAATTTCTCCTTTTGGAGCTTTCTTTTAGTTGTTGTGATGGTAATGTTTTTCACTATAAATGTTAGTTCTGTCGAACAATCTAAAATAAAAGGCATGGAAATGAATGTGATTGATCAATGTTGGAGATTTAATCCTGAATGGAGGAAACATCGACAACAACTTGCTATGTGCTCAGTTGGCTATGTAGGAAAAATGACAAACAACATAGGTAAAGACCTCGTTAATTATAAAGTTACTGATCCTAGTGACCATCCCTTAAATCCACAACCTGGAACTTTGAGATATGGAGCTTCTAAGATTCAAGGTAAAATTTGGATTACATTCCAAAGGGACATGAACATTAGGCTTGAGAGACCCCTTCTCATTAGTAGTTTCACTACCATTGATGGTCGAGGTGTCAATGTCCACATCGCTAACAATGCATGTTTGATGATCTATAAGGCAACAAACATAATTATCCACGGAATTAGGGTTCATCATTGTCGACCTCAAGCTCCTGAAATGGTGATGGGTCCCAATGGAAAGATAATGCCATTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTTCTGCTTCAAAGGTTTGGATTGATCATAACACACTTTATGATTGTCAAGATGGTCTTCTTGATGTTACAAGAGGTTCTACTGATGTAACAATCTCCAACAATTGGTTTAGGGAGCAAAATAAAGTTATGCTTCTTGGACACGATGATGGATTCGTAAGAGACAAAAACATGAAAGTAACAGTAGTATACAACTATTTTGGGCCTAATTGCAACCAACGTATGCCTAGAATTCGTCATGGATATGCACACGTTGCAAACAATATGTACATGGGATGGGTGCAATATGCAATTGGTGGAAGCATGGGACCAAGCCTTAAAAGCCAATCAAACCTCTTCATAGCACCAACGGAGAATAAGGAGGTGACATGGAGAAAAAGTAGTAATGCAATTGGAGATACATGGAAATTTTATTCAATTGGAGACGCTTTTGAAAATGGTGCATCCTTCATAGATACAAAAGGTGGACAAGTGAAAAAACCCAATTATAGCCTTGAACAAAATTTTGAAGTTGTTGATGTCAAATTTGTGAGATCATTGACGAGCTCATCGGGAGTGCTAAAATGCGGTAAAACTTCAATATGTTAG 1176 0.3776 MAGHQVINFSFWSFLLVVVMVMFFTINVSSVEQSKIKGMEMNVIDQCWRFNPEWRKHRQQLAMCSVGYVGKMTNNIGKDLVNYKVTDPSDHPLNPQPGTLRYGASKIQGKIWITFQRDMNIRLERPLLISSFTTIDGRGVNVHIANNACLMIYKATNIIIHGIRVHHCRPQAPEMVMGPNGKIMPLGQVDGDAIRLVSASKVWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCNQRMPRIRHGYAHVANNMYMGWVQYAIGGSMGPSLKSQSNLFIAPTENKEVTWRKSSNAIGDTWKFYSIGDAFENGASFIDTKGGQVKKPNYSLEQNFEVVDVKFVRSLTSSSGVLKCGKTSIC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00380 391 SUPERFAMILY Pectin lyase-like 82 350 IPR011050 -
Car05g00380 391 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Car05g00380 391 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Car05g00380 391 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Car05g00380 391 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Car05g00380 391 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Car05g00380 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Car05g00380 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Car05g00380 391 Pfam Pectate lyase 129 309 IPR002022 -
Car05g00380 391 SMART amb_all 118 315 IPR002022 -
Car05g00380 391 Gene3D - 41 384 IPR012334 -
Car05g00380 391 PANTHER PECTATE LYASE 7 387 - -
Car05g00380 391 PANTHER PECTATE LYASE 18-RELATED 7 387 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00380 Car-Chr5 18500314 18502153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00380 72 318 Polysaccharide Lyase AT5G09280 70.565 1.38e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00380 K01728 - gmx:100811216 652.899