Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00368 | atggaacaaccttctttgtcttacttgacatttgattggacttatgatgtctttctcagttttagaggcatcgatactcgaaacaacttcactggtaatttgtataactctcttcatcaaagaggtatacacactttcattgatgatgaagaaattcaaaaaggagaagaaatcacgcatactcttctccaagccattaaacaatctaggattttcattgctgttctctctaatagctatgcatcttcaactttctgtttgactgaacttgtaatgatccttgagtgttccaagtcacaaggaaggttgtttttgccagttttttatgatgtggatccgttccaaattcgacacctaactggggcttatgctgaggcttttgcaaaacatgaggtgagatttagagatgacaaagataataaagtgcagaaatggaaggatgctttatgtcaagctgctagtgtctctggatggcattttaaaccagggtttgaatctgaatataagtttattcgaaagatagttgcagaggtctctataaagatcaaccgcattcctttgcatgttgcaaacaacccagttgggctagagtctcgaatattagaagtgacatctctccttagacttgagtcggatgagaaagttagcatggtaggcatttatggaatcggtggaattggaaaatcaacaactgctcgtgctgttcataacttgattgctgatcaatttgaaggtgtgtgttttcttgctaacataaaagagagagcaattcatcagagtcttgcacagctccaagaaacactactttctgaaatacttggggaaaaggatattaaagtgggagatgtttatagaggagtttcaataattaaaaggaggcttcaaagaaagagagtccttttgattttggataatgttgacaaagtgcaacatttacaggcacttgtaggaggacatgattggtttggcttcggcagcaagatcataatcactacaagggacaagcatttgttggccactcatgggattttgaaagtctttgaggttaaacaactaaaagatgataaggctctcgagttattttgttggcatgcatttaaaaatcaaaaaattgatctaggttatgtggatattgcaagacgtgtaacatcttattgtcatggtcttcccttggctttggaggtaattggttctcacttgtttggaaaatgtttagctgtatggaagtcctcattagataaatatgaaagagtcattcgtcaagacatccatgaaattcttaaagttagctatgatgatttggaagaagatgagaagggtatctttctagatatagcttgtttcttcaattcttatgaaataagctatgtcaaagaaatactatatttgcatggttttcatgcagaagatggcatacaagtgctaaccgacaaatctctcattaaaattgacgttaatggttgtgtgagaatgcgtgacttaattcaaggcatgggtagagaaatcgtgaggcaggaatcaacattggagcctggaaagcgtagtagattatggtttagtgatgacattgttcatgttttggaagaaaacaagGGAACTCATACAATTGAAGTTATGATCGTCAACTTGAACAAAGACAGAAAAGTGAAAtggagtggaatagcctttggacagatgaagaacttgagaattcttataattagaaatgcacgattttctagaggtcctcaaagtcttccaaatagtttgagagtGCTTGATTGGAGCCGATATCCATCCTCTGCTTTACCATCTGATTTTAATCCCAAGAATCTTGCCATACTTAACATGCCTGAAAGTTGCCTTAAATGGTTCGAATCACTCAAGGTTTTTGAGACATTGAGCTTTCTGGATTTTGAAGGATGCAAATTCCTAACTGAAGTACCTAGCTTATCTAGAGTAccaaatttgggggcgctatgtcttgactattgcgctaacttaattaaaattcatgactcagttgggtttcttgatagacttgtgttatttagtgctcaaggatgcacccaattacaaagtttggttccctatatcaacttgccatctctagagactttagatcttaggggttgctcgtgtcttgagatcttcccagaagtacaaggagtgatggagaatattaaagatgtttatttagaccaaactatcctaaaacaattgccttttacatttggaaatctcgttggtctCCAACGGTTGTTCTTGAGGGGATGCAAAAGGATGATTCAGCTACCAAGCTACATATTGCCCAAACTTGAGATAATAACATCATATGGTTGTAGGGGATTTCGATCATCTAAAGATGAAGAAAAATTGAATCCAAAAGTGTTTGCAAATTCTATGTGTATTTATAATGAATATGGAAAGTCCTTCATGTATTCTTGTAATATAAGCTCCAAAGATTTCATAGAAGTATGTAGTATTTTGTGGAATCAGCAAGGGCATGTTCCTGCGAATCTTGATGTTGGGGTACTTCGTTCGAGGCTTATAGAGGGAAGAGTAAATGTGGATAAGCTTAGAAGAAATGAATCTTCAGTGCGTTTTCGGTTCCGAACAAAATTCCCCAAAATTGCTTTATGGTGTTGTGTAGAACCTGGAAAGCATTTTGACAGCATGGTGTTGGATTTCAAGTTGAATGTACTCATCAATGGCACTAAGCAACTCACTTCTTCCTGCCGATACATATTTTATACACAAAATTTGACGTCCCAAATCCTTTGTTGTGATCTACAATGTAAAGTGGAAGGTGTATTTTCAGAGACTGAGTGGAACATTGCTGAGATTTTGTGA | 2832 | 0.1116 | MEQPSLSYLTFDWTYDVFLSFRGIDTRNNFTGNLYNSLHQRGIHTFIDDEEIQKGEEITHTLLQAIKQSRIFIAVLSNSYASSTFCLTELVMILECSKSQGRLFLPVFYDVDPFQIRHLTGAYAEAFAKHEVRFRDDKDNKVQKWKDALCQAASVSGWHFKPGFESEYKFIRKIVAEVSIKINRIPLHVANNPVGLESRILEVTSLLRLESDEKVSMVGIYGIGGIGKSTTARAVHNLIADQFEGVCFLANIKERAIHQSLAQLQETLLSEILGEKDIKVGDVYRGVSIIKRRLQRKRVLLILDNVDKVQHLQALVGGHDWFGFGSKIIITTRDKHLLATHGILKVFEVKQLKDDKALELFCWHAFKNQKIDLGYVDIARRVTSYCHGLPLALEVIGSHLFGKCLAVWKSSLDKYERVIRQDIHEILKVSYDDLEEDEKGIFLDIACFFNSYEISYVKEILYLHGFHAEDGIQVLTDKSLIKIDVNGCVRMRDLIQGMGREIVRQESTLEPGKRSRLWFSDDIVHVLEENKGTHTIEVMIVNLNKDRKVKWSGIAFGQMKNLRILIIRNARFSRGPQSLPNSLRVLDWSRYPSSALPSDFNPKNLAILNMPESCLKWFESLKVFETLSFLDFEGCKFLTEVPSLSRVPNLGALCLDYCANLIKIHDSVGFLDRLVLFSAQGCTQLQSLVPYINLPSLETLDLRGCSCLEIFPEVQGVMENIKDVYLDQTILKQLPFTFGNLVGLQRLFLRGCKRMIQLPSYILPKLEIITSYGCRGFRSSKDEEKLNPKVFANSMCIYNEYGKSFMYSCNISSKDFIEVCSILWNQQGHVPANLDVGVLRSRLIEGRVNVDKLRRNESSVRFRFRTKFPKIALWCCVEPGKHFDSMVLDFKLNVLINGTKQLTSSCRYIFYTQNLTSQILCCDLQCKVEGVFSETEWNIAEIL | 943 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00368 | 943 | Pfam | TIR domain | 15 | 181 | IPR000157 | GO:0007165 | |
| Car05g00368 | 943 | SUPERFAMILY | "Winged helix" DNA-binding domain | 422 | 528 | IPR036390 | - | |
| Car05g00368 | 943 | SMART | till_3 | 14 | 155 | IPR000157 | GO:0007165 | |
| Car05g00368 | 943 | SMART | AAA_5 | 214 | 353 | IPR003593 | - | |
| Car05g00368 | 943 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 9 | 703 | IPR044974 | GO:0006952 | |
| Car05g00368 | 943 | PRINTS | Disease resistance protein signature | 692 | 708 | - | - | |
| Car05g00368 | 943 | PRINTS | Disease resistance protein signature | 293 | 307 | - | - | |
| Car05g00368 | 943 | PRINTS | Disease resistance protein signature | 386 | 400 | - | - | |
| Car05g00368 | 943 | PRINTS | Disease resistance protein signature | 217 | 232 | - | - | |
| Car05g00368 | 943 | Gene3D | - | 184 | 345 | IPR027417 | - | |
| Car05g00368 | 943 | SUPERFAMILY | L domain-like | 542 | 786 | - | - | |
| Car05g00368 | 943 | PANTHER | RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED | 9 | 703 | - | - | |
| Car05g00368 | 943 | Gene3D | - | 351 | 435 | IPR042197 | - | |
| Car05g00368 | 943 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 8 | 158 | IPR035897 | - | |
| Car05g00368 | 943 | Gene3D | - | 11 | 183 | IPR035897 | - | |
| Car05g00368 | 943 | Pfam | NB-ARC domain | 206 | 432 | IPR002182 | GO:0043531 | |
| Car05g00368 | 943 | ProSiteProfiles | TIR domain profile. | 13 | 182 | IPR000157 | GO:0007165 | |
| Car05g00368 | 943 | Gene3D | Ribonuclease Inhibitor | 526 | 788 | IPR032675 | - | |
| Car05g00368 | 943 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 180 | 445 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car05g00368 | Car-Chr5 | 18129416 | 18133798 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car05g00368 | 15 | 774 | WRKY Transcription Factor Family | AT4G12020 | 31.692 | 9.76e-94 | 324 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00368 | - | - | mtr:MTR_3g020650 | 1515.36 |