Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00367 ATGGGGCAACAGCTGCCACAGCAGTACCAGCAGCCCTTGACGCAACAGCCATACGTCATGATGCAACCTCAACTTCAGGCGCAACCATATCTCTACACATGCTTCGATCAAATCGGCGAGGTAACATCTCTAAAAGTGATTAGGAATAAGCAAACTAGTCAATCGGAAGGTTATGGTTTTATCGAGTTTAATTCTCGTGCTACTACTGAGAGAGTGCTTCAAACATATAATGGAGCCATTATGCCGAATGGTGGCCAGAGCTACAAACTGAATTGGGCAACATTCAGTGCTGGGGAGAGGTCATCTCGGCAGGATGATGGTCCTGATCATACCATTTTTGTTGGTGATTTGGCTGTTGATGTTAATGATTACCTTATGCAGGAGACTTTTAGGGCTTGTTATAACTCGATGAAGGGGGCAAAAGTTGTGATTGATAGGCTTACTGGTCGGTGTAAGGGTTATGGTTTTGTTAGATTTGCTTATGAGAGTGAACAAATGAGGGATATGACTGAGATGCAAAGGGTTCTTTGTTCAACAAGGCCCATGAGGATTGGACCAGCCACTAATAAAAATCCTGCTGCCACCACTCAGCAGCCGAAAGCTTCATATCAGAACTCTCAAGGTGCACAAAGTGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCACTGATGATCATCTGAGGCAAGTTTTCAGCCAATATGGTGAATTAGTACATGTGAAGATTCCATCAGGCAAGCGATGTGGATTTGTCCAATTTTCGGACAAGGCTGAGCGTGAAAGAGGTGTCACAATTGACATTGCTCTATGGAAGTTTGAGACAACTAAGTATTACTGCACTGTCATTGATGCCCCCGGACACAGAGATTTCATTAAGAACATGATTACTGGAACATCCCAAGCTGATTGTGCTGTCCTTATCATTGATTCCACTACTGGTGGTTTTGAAGCTAGTATTTCTAAGGACGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCTAATGATTTGTTGTTGTAACAAGATGGATGCCACTGCTCCCAAGTACTCTAAGGCTAGGTATGATGAAATTGTGAAGGAAATTTCATCCTATTTGAAGAAGGTTGGCTACAACCCAGACAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGGGCTCTACAAACCTTGACTGGTACAAGGGTCTTTATCGTGGAGGAAACTCTCTAGCCTTTGTCGTGGCAGCTGTTGCAGCCCTTATGGGTGGGCTCTTAGCTGACACGTTTGAAAGATTTGCAATTCAATTGATGGGATTCTTCTTGGTGCACGATTATTctctcttcgatgATCATATAAAGAATAAGAGGAACTTGAATATAAAGAAGCTTGCTGGAACTCTCGGAGGAGTTATAGCATTCATCATAGGACTTACAACTCTTTTATTGGCCTCTTCAACATTTAGGAAGAAGCTTGGTAAGCCAAATGAAAAATTTATGATAAGAGAAAGAAATGACTTGGCAACAATATTTGATTTTTCAACCATCAATAATGCCACAAATAACTTCTCTAACAGAAACAAGTTAGGAGAAGGTGGCTTTGGACCAGTATATAAGGGCTTATTGGCAGATGGACAAGAGATTGCTGTTAAGAGACTTTCTAAAACATCAGGACAAGGAACTGAGGAGTTCAAAAATGAAGTTAAATTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCAATTCAACAAGACGAAAAGCTGTTGATCTATGAGTTCATGCCCAACAGAAGCTTGGATTTCTTTATTTTTGATAATACACGAAGTAAATTACTAGATTGGACTATACGCTTGGAAATTATTGATGGGATTGCTCGGGGGCTGCTGTATCTCCATCAAGATTCTACACTAAGAATCATACATAGAGATGTCAAGACAAGCAATATTCTTCTTGATATTGATATGATCCCAAAGATATCGAATTTTGGTTTAGCCAGATCATTTATGGGAGACCAAGCTGAGGCCAATACAAATAGAGTGATGGGAACATATGGATATATGCCTTCAGAATATGCAGTGCATGGATCTTTCTCGATAAAATCTGATGTTTTTAACTTTGGAGTTGTTGTGCTTGAGATAATTAGCGGTAAGAAGAATCGCGGATTTTGTGACCCTCGAAATCATCTAAACCTTCTTGGTCATGTAAGTTTTGAA 2256 0.4016 MGQQLPQQYQQPLTQQPYVMMQPQLQAQPYLYTCFDQIGEVTSLKVIRNKQTSQSEGYGFIEFNSRATTERVLQTYNGAIMPNGGQSYKLNWATFSAGERSSRQDDGPDHTIFVGDLAVDVNDYLMQETFRACYNSMKGAKVVIDRLTGRCKGYGFVRFAYESEQMRDMTEMQRVLCSTRPMRIGPATNKNPAATTQQPKASYQNSQGAQSENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPSGKRCGFVQFSDKAERERGVTIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEASISKDGQTREHALLAFTLGVKLMICCCNKMDATAPKYSKARYDEIVKEISSYLKKVGYNPDKIPFVPISGFEGDNMIEGSTNLDWYKGLYRGGNSLAFVVAAVAALMGGLLADTFERFAIQLMGFFLVHDYSLFDDHIKNKRNLNIKKLAGTLGGVIAFIIGLTTLLLASSTFRKKLGKPNEKFMIRERNDLATIFDFSTINNATNNFSNRNKLGEGGFGPVYKGLLADGQEIAVKRLSKTSGQGTEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDFFIFDNTRSKLLDWTIRLEIIDGIARGLLYLHQDSTLRIIHRDVKTSNILLDIDMIPKISNFGLARSFMGDQAEANTNRVMGTYGYMPSEYAVHGSFSIKSDVFNFGVVVLEIISGKKNRGFCDPRNHLNLLGHVSFE 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00367 752 SUPERFAMILY RNA-binding domain, RBD 30 191 IPR035979 GO:0003676
Car05g00367 752 CDD RRM1_SECp43_like 30 96 - -
Car05g00367 752 Gene3D - 109 185 IPR012677 -
Car05g00367 752 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 189 IPR000504 GO:0003723
Car05g00367 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Car05g00367 752 Pfam Protein tyrosine and serine/threonine kinase 535 732 IPR001245 GO:0004672|GO:0006468
Car05g00367 752 SUPERFAMILY RNA-binding domain, RBD 200 267 IPR035979 GO:0003676
Car05g00367 752 CDD RRM2_SECp43_like 109 188 - -
Car05g00367 752 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 261 435 IPR000795 GO:0003924|GO:0005525
Car05g00367 752 Pfam Elongation factor Tu GTP binding domain 261 401 IPR000795 GO:0003924|GO:0005525
Car05g00367 752 SMART rrm1_1 111 185 IPR000504 GO:0003723
Car05g00367 752 SMART rrm1_1 219 280 IPR000504 GO:0003723
Car05g00367 752 SMART rrm1_1 16 91 IPR000504 GO:0003723
Car05g00367 752 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 276 IPR000504 GO:0003723
Car05g00367 752 ProSiteProfiles Protein kinase domain profile. 532 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00367 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 414 IPR027417 -
Car05g00367 752 SMART serkin_6 532 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00367 752 Gene3D - 22 94 IPR012677 -
Car05g00367 752 SUPERFAMILY Protein kinase-like (PK-like) 513 743 IPR011009 -
Car05g00367 752 Gene3D - 268 420 IPR027417 -
Car05g00367 752 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 95 IPR000504 GO:0003723
Car05g00367 752 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 266 IPR000504 GO:0003723
Car05g00367 752 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 82 IPR000504 GO:0003723
Car05g00367 752 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 164 IPR000504 GO:0003723
Car05g00367 752 PRINTS GTP-binding elongation factor signature 287 297 IPR000795 GO:0003924|GO:0005525
Car05g00367 752 PRINTS GTP-binding elongation factor signature 267 275 IPR000795 GO:0003924|GO:0005525
Car05g00367 752 PRINTS GTP-binding elongation factor signature 303 314 IPR000795 GO:0003924|GO:0005525
Car05g00367 752 PRINTS GTP-binding elongation factor signature 347 356 IPR000795 GO:0003924|GO:0005525
Car05g00367 752 Gene3D Transferase(Phosphotransferase) domain 1 608 750 - -
Car05g00367 752 MobiDBLite consensus disorder prediction 182 217 - -
Car05g00367 752 MobiDBLite consensus disorder prediction 189 217 - -
Car05g00367 752 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 487 748 - -
Car05g00367 752 Gene3D - 187 267 IPR012677 -
Car05g00367 752 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 487 748 - -
Car05g00367 752 Gene3D Phosphorylase Kinase; domain 1 507 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00367 Car-Chr5 18052864 18075219 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00367 263 412 Eukaryotic Initiation Factors Gene Family AT1G07930 95.333 2.72e-99 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car05g00367 PK_Tyr_Ser-Thr 5.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00367 - - cam:105852200 800.045