Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00361 ATGCATGTTGGGTCAAAGTTCATTCCTACAGATAAAGTTTTGATGAAAAAAAAGGAAAACATGGAAAAGAGGGAATTTTCTGAATTGCTGTCAAGGATGAAAGTTTTGGCAGATGAGGTTGTTTGTTTTGCTAAGAAATCTAAAATTGAGGTAGATGCTTTTTCTGAGTTTGGCATGTTGGTTGAGAAATTGCCACCAATTTTGAATGAATTGAGTGATAAAAGCAGTGTTTTGGACAAGCCGTCGATTCGAAAATCGTTGGAATCTCTTGAGAATGAGCTACGGCGTGCTAAAACATTAACAAAAAGCTCGAATTTGAGACACCCTGTCAAGCAAATCGAGGACATGACACATGATATTGGTCGGTCGTTGGGAGTTTTGCTTGTTGCTAGCCTTGAAGTGTCTATTGATTTCAGAGAAAAGATTGGTACATTGCAAAGACAGATGATGAATTCAAGATTTGATGGCAATTCAAGTGTGACTTCAAGTCCAAGATCGGAGTTTTTCGCAAGTGAAACAAGGACGGTCGGGGAAATTGAAGAGGAAATAGTTAATGTTTCTATTGATGATGTGATTTTGCAACTTAAGAATGGCAATGATGAAGAATTTGCAGTTTCACTTCTTAGACTAAAGGAGTTCATGAGAAGTGAAAAATTAGATGGCGGTTTGATTAACGAGGAAGCAACTATTTCCATTCTTTTCAATCGTCTAGGTTCGTGTAAGGCGGATAATAGGCTTGCCATAATTCAACTGCTAAGAAATATTGCTTTTGGAAATGATGAGAAAAAGGAGAAGATGGTAGATATTGAGTTTTTATCGGCCGTGGTGAATTCGAAGGCGGATCGGANNNNNNNNNNGGTCGCTATCCTTAATGCGGATGACCCGATTGCTTCACATGATGCAGCAAAGTTATTGGATATTTTGTCAAGTAATAATCAAAATGCACTTCATATGGCTGAGGCTGGTTACTTTAGGCCATTAGTTCAGTATTTGAAGGAAGGGTCTGACATGAACAAGATCCTAATGGCGACGGCACTTTCTCGATTGGAACTCACCGATCACAGCAAACTTACACTCGGAGAAGATGGAGCAATTGATCCCCTAGTCAAAATGTTCATTAACGGAAAACTCGAATCCAAGTTATCGTCTCTAAATGCATTACAAAATCTCTCTGGCTTGACAGAAAACGTGCAGCGTATGATTCGATCGGGAATTACAGGACCTTTGCTCCAGCTTCTTTTCTCTGTAACATCTGTGCTCATGACTCTAAGAGAGCCTGCATCGGCTATTCTTGCACGAATTGCACAGTCGGAATCCATTCTTGTCAACGAAGACATTGCTCAACAGATGCTTTCACTTTTGAATCTTTCGAGTCCTATAATTCAATATCATCTATTAGAAGCTCTAAATAGCATGGCTTCTCATCAAGGTGCTTCTAAAGTGAGAAGAAAAATGAAAGAAAAAGGTGCACTTCAACTTCTTTTACCTTTTCTTAAGGAAAATAACACCAAAATTAGGTGTAAGGTCTTGAATTTGTTATATACACTTTCTAAAGATATAACAGATGAGTTAACCGAATATCTCGACGAAACTCACCTTTCCAATATTGTTAATATTATCTCATCTTCAAAATCAGAGAGCGAAAAAGCTGCGGCTATTGGCATACTTAGTAATCTTCCTGCTAGCGATAAAAAAGTAACAGATATATTAAAGAGAGCAAATTTGCTTTCGATTTTGATATCCATTTTGTATTCTAGCAATGGAAGTAACTCACCCTCGAAAAATAGCTTATCCGAGAATGCGGCCGGTGTTCTAATCCGCTTCACAAATTCATCTGACAAGAAACTTCAACTTCTTTCAGTAGAACAAGGGGTGATTCCTTTGCTAGTAAAATTGCTCTCGAGCGGTTCGCCAACCACAAAATCAAGGGCCGCAAACTCATTAGCTCAACTTTCACAAAACTCTCTTTCGCTTAGGAAGTCTAGAAAGTCGAGATGGTTGTGTGTCCAACCTTCAATGAATGCACATTGTGAAGTTCATGATGGATATTGCTTTGCCAATAGCACATTTTGTTTAGTCAAAGCGAATGCGGTTTCTCCGCTTATCGAAATATTGGAAGATAAAGAGAAGGAAGTAGTTGAAGCTTCTCTTGTTGCACTTTCAACTCTTTTGCAAGATGAAATTTGGGAAGGTGGTGTCAATTTCATTGCTAAAAATTCAGGTGTGCAAGCTATTATAAAAACCCTAGAAGTTGTTGGTGATGCTAAGGTTCAAGAAAAAGCATTGTGGATGTTGGAGAGAATATTTAGAGTTGAAGAACATAGAGTGAACTATGGAGAACTTGCTCAAGTGGTTCTTATTGATTTGGCACAAAAAAGTGATTCTAGATTGAAGTCAACTGTTGCAAAAGTATTAGCTGAGTTAGAGCTTTTGCAAGCTCAATCAAGTTACTTTTGA 2457 0.3805 MHVGSKFIPTDKVLMKKKENMEKREFSELLSRMKVLADEVVCFAKKSKIEVDAFSEFGMLVEKLPPILNELSDKSSVLDKPSIRKSLESLENELRRAKTLTKSSNLRHPVKQIEDMTHDIGRSLGVLLVASLEVSIDFREKIGTLQRQMMNSRFDGNSSVTSSPRSEFFASETRTVGEIEEEIVNVSIDDVILQLKNGNDEEFAVSLLRLKEFMRSEKLDGGLINEEATISILFNRLGSCKADNRLAIIQLLRNIAFGNDEKKEKMVDIEFLSAVVNSKADRXXXXVAILNADDPIASHDAAKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLTLGEDGAIDPLVKMFINGKLESKLSSLNALQNLSGLTENVQRMIRSGITGPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDIAQQMLSLLNLSSPIIQYHLLEALNSMASHQGASKVRRKMKEKGALQLLLPFLKENNTKIRCKVLNLLYTLSKDITDELTEYLDETHLSNIVNIISSSKSESEKAAAIGILSNLPASDKKVTDILKRANLLSILISILYSSNGSNSPSKNSLSENAAGVLIRFTNSSDKKLQLLSVEQGVIPLLVKLLSSGSPTTKSRAANSLAQLSQNSLSLRKSRKSRWLCVQPSMNAHCEVHDGYCFANSTFCLVKANAVSPLIEILEDKEKEVVEASLVALSTLLQDEIWEGGVNFIAKNSGVQAIIKTLEVVGDAKVQEKALWMLERIFRVEEHRVNYGELAQVVLIDLAQKSDSRLKSTVAKVLAELELLQAQSSYF 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00361 818 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 20 279 - -
Car05g00361 818 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 279 - -
Car05g00361 818 Coils Coil 80 107 - -
Car05g00361 818 SUPERFAMILY ARM repeat 359 773 IPR016024 -
Car05g00361 818 SMART arm_5 685 725 IPR000225 GO:0005515
Car05g00361 818 SMART arm_5 478 518 IPR000225 GO:0005515
Car05g00361 818 SMART arm_5 352 392 IPR000225 GO:0005515
Car05g00361 818 SMART arm_5 563 610 IPR000225 GO:0005515
Car05g00361 818 SMART arm_5 393 436 IPR000225 GO:0005515
Car05g00361 818 SMART arm_5 311 351 IPR000225 GO:0005515
Car05g00361 818 SMART arm_5 613 653 IPR000225 GO:0005515
Car05g00361 818 SMART arm_5 729 770 IPR000225 GO:0005515
Car05g00361 818 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 287 818 - -
Car05g00361 818 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 287 818 - -
Car05g00361 818 Gene3D - 679 814 IPR011989 -
Car05g00361 818 Gene3D - 217 447 IPR011989 -
Car05g00361 818 Pfam Armadillo/beta-catenin-like repeat 620 652 IPR000225 GO:0005515
Car05g00361 818 SUPERFAMILY ARM repeat 188 414 IPR016024 -
Car05g00361 818 Gene3D - 448 670 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00361 Car-Chr5 17464676 17468451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00361 301 818 U-box Gene Family AT1G76390 28.905 9.43e-35 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00361 K08332 - gmx:100791453 1152.12