Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00359 ATGGAACAACAACGAGTGCTAATTCCTTTTTCCAAGGGattttctaattctacttacgatgttttcctcagttttagaggaaaagatactcgctatggtttcactggaaatctctaccatgctttgaaccaaagaggaatcaacactttcatggatgatgaaatgattaagagaggtgaacaaatttcacccaccattttcaaagcaattgaacaatctaggactgctattattgttttctccaaaacctatgcatcctcaaaatggtgtcttcaagaacttgtcaaaattattgcctgttacaaaggaaaggagctagtggtgttaccggtgttttacaaggtcgatccgtcggaggttcgacagcagacggggagttatggacgacaattggctatgcatgaagagaaaatgatggataacgaaaaggaattgcaaagttggaggttggctcttcgtgaagctgcaaacctTGCAGGGTGGCCTTTTAGAGATGGATCTGAATATGAATATGAATTTATCAAAAGGATTGCCGACACAGTGGGCAGCACATCAAAACAAAATCtttcatatgttgaggattatgcagttggactagagtcacgtgtatctaaaataataccccgtttgcaaatgcctgatcccaatgtcatcatgataggaatatgtggggttggtggaataggcaaaactactttggcaagagctttgtataattccattagccaagaatttgaaggtttgtgcttcctctatgatgtcagagaaaattcaacgaaatatggattggcatatctacaacaggtaattctttctgatgttgttggtgagaatatcaagctgcgtaatgagaatgaaggaattccaatcctaatcagaaagttgcaagataaacgggttcttttgatacttgatgatgttgacaagttggatcaactgaagaatctagcaggagcatgttgttggtttggttggggaagtaggattgtcataaccactagacataaagatattctagctgctcatggagttggaaatatatatgatgtacctagatttgattattatgaagctcttcaacttttaagttttattgcatcaaaaagacctactcccgatggagtctggaatcgcgcaatccactattccaacggccttccattggttttaaaggttataggttctgatttattagaaaaatcaacagatgaatgggaggtttcattagacagatatgcgcaagtctgcaatcaagaaactcaaagtatacttgaagtgagttatgatagtttgaatgaatgcgagaggagaattttccttgacattgcatgtttcttcaatggagagccattgccatatgttgaagaaatactatctgcttgtggtttctacacaaaatatggtattgaacgacttaaggatagatctctattatcaatcactcccagtggaaatttgatgatgcatgatcatataatagacatcgctatgaaaatagtacaacaagaatcacccatatatccttgcaaacgaagtaggttatggttgcctgaggatgttcttcaagttttagacgaaaactcgggaaatgataaaattgaagtcatgatattggacaacttaccacgaggacatttagagaatttgagtgacaaaatcttcaaagagatgaaaagcttgagaatactaattattaaagatgcaatatattctgaagtcctccaacatctccctaatagcttaagagttctggattggagtggatatccttcatggtgtttaccacttgattttgtcaacTTGCCTTCTAATTGTCTCATTTTGAACCAATTCAAGAATATGAAGTGTTTGATGAGAATGGATTTCACTTACTGTAATTTCAtaagagaagtacctgatttgtctggtgtcccaaacttgataaaattgtatcttgataattgtataaatgttactaaaattcatgattctgttggattacttggtaaccttaaagagctgacagccacacgatgcactaatctaaaaacaatccccgtcgcattcaagttatcatctcttagagttctctctttctccgagtgctcaagactcgcgaggtttccagaaatattgtgcaagatcgaaaatttggcacatgtcaacttgtggcaaactgccatagaggaattaccattttctattggaaatgtgacaggacttgtagttttaactctgatggattgtgctaggctcgataagctacctagtagcatttttacactcccaagacttcaagaaattcaagctgactcatgtaaagggtttggcatatctattgagtgtgaagataataataaactactgagtttcactgtgtgtccaaacaagattcatttgtatttgagctcttgcagtttaacagatgaacatctttttatatgtctaagcggtttcgccaatgtggtacatttggacatatcttacaataatttcactgtccttccgcaatgcattaaagaatgtatccacttgaacactcttctgctaacaaactgcaatcagcttcaagaaatctcagtgattccctcaaaattgaaagATATAGATTCACTGAACTGCACATCATTGACATCCCAGTCACAATGTGTACTATTGAGCCAGGCATTTCACGAAACCGGGGAAAAAAGTGTGATGCTTCCAGGGTCAAGTATTCCAGAATGGTTTGATCATTGTAGCAATGAAAGATCCATAACCTTTTATGCTCGTGAGAGATTCCCTAGCATTTGTGTGTGTGTTGTTTTTGGAATGTTGGAAAATCTGCCTCATCATTTTGTAGTTAGGTTCTGTTTAAACATCAATGGCCACAAAATGATACTATCACCATGTTCTAGTTTGTCAATTGTGAAAGAGCATGTGTGGCTGTTTGATCTAAGTACCTTAATCTATAACAATCACTTTCTTAGAGAAACATTTGAGAAACATGGTTGCTGGAATCATGTGGAAGTTTCATGTGAGGATTGTCAAGATGAACATTTGATGGCACACGGTGTTCATGGAGCAAGAAGAATCACAATTGTGAAATGGTATGGAATTCATGTGTACAGGCAAGAAAACATAATGAATGATGTCTTATTCACAAGTGTCAACACAATGGAGACTTTTTCACAACAATCACTCAATGATATTAGTAATAATGAAGTAATGCAAATATAG 3195 0.0948 MEQQRVLIPFSKGFSNSTYDVFLSFRGKDTRYGFTGNLYHALNQRGINTFMDDEMIKRGEQISPTIFKAIEQSRTAIIVFSKTYASSKWCLQELVKIIACYKGKELVVLPVFYKVDPSEVRQQTGSYGRQLAMHEEKMMDNEKELQSWRLALREAANLAGWPFRDGSEYEYEFIKRIADTVGSTSKQNLSYVEDYAVGLESRVSKIIPRLQMPDPNVIMIGICGVGGIGKTTLARALYNSISQEFEGLCFLYDVRENSTKYGLAYLQQVILSDVVGENIKLRNENEGIPILIRKLQDKRVLLILDDVDKLDQLKNLAGACCWFGWGSRIVITTRHKDILAAHGVGNIYDVPRFDYYEALQLLSFIASKRPTPDGVWNRAIHYSNGLPLVLKVIGSDLLEKSTDEWEVSLDRYAQVCNQETQSILEVSYDSLNECERRIFLDIACFFNGEPLPYVEEILSACGFYTKYGIERLKDRSLLSITPSGNLMMHDHIIDIAMKIVQQESPIYPCKRSRLWLPEDVLQVLDENSGNDKIEVMILDNLPRGHLENLSDKIFKEMKSLRILIIKDAIYSEVLQHLPNSLRVLDWSGYPSWCLPLDFVNLPSNCLILNQFKNMKCLMRMDFTYCNFIREVPDLSGVPNLIKLYLDNCINVTKIHDSVGLLGNLKELTATRCTNLKTIPVAFKLSSLRVLSFSECSRLARFPEILCKIENLAHVNLWQTAIEELPFSIGNVTGLVVLTLMDCARLDKLPSSIFTLPRLQEIQADSCKGFGISIECEDNNKLLSFTVCPNKIHLYLSSCSLTDEHLFICLSGFANVVHLDISYNNFTVLPQCIKECIHLNTLLLTNCNQLQEISVIPSKLKDIDSLNCTSLTSQSQCVLLSQAFHETGEKSVMLPGSSIPEWFDHCSNERSITFYARERFPSICVCVVFGMLENLPHHFVVRFCLNINGHKMILSPCSSLSIVKEHVWLFDLSTLIYNNHFLRETFEKHGCWNHVEVSCEDCQDEHLMAHGVHGARRITIVKWYGIHVYRQENIMNDVLFTSVNTMETFSQQSLNDISNNEVMQI 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00359 1064 Pfam NB-ARC domain 200 431 IPR002182 GO:0043531
Car05g00359 1064 Gene3D - 14 185 IPR035897 -
Car05g00359 1064 SUPERFAMILY L domain-like 540 876 - -
Car05g00359 1064 Pfam TIR domain 19 187 IPR000157 GO:0007165
Car05g00359 1064 Gene3D - 186 344 IPR027417 -
Car05g00359 1064 Gene3D - 353 437 IPR042197 -
Car05g00359 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 442 IPR027417 -
Car05g00359 1064 SMART till_3 18 158 IPR000157 GO:0007165
Car05g00359 1064 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 161 IPR035897 -
Car05g00359 1064 SUPERFAMILY "Winged helix" DNA-binding domain 420 524 IPR036390 -
Car05g00359 1064 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 1045 - -
Car05g00359 1064 SMART AAA_5 216 354 IPR003593 -
Car05g00359 1064 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 1045 IPR044974 GO:0006952
Car05g00359 1064 ProSiteProfiles TIR domain profile. 17 181 IPR000157 GO:0007165
Car05g00359 1064 PRINTS Disease resistance protein signature 219 234 - -
Car05g00359 1064 PRINTS Disease resistance protein signature 294 308 - -
Car05g00359 1064 PRINTS Disease resistance protein signature 383 397 - -
Car05g00359 1064 PRINTS Disease resistance protein signature 682 698 - -
Car05g00359 1064 Gene3D Ribonuclease Inhibitor 528 710 IPR032675 -
Car05g00359 1064 Gene3D Ribonuclease Inhibitor 711 881 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00359 Car-Chr5 17402586 17420241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00359 9 766 WRKY Transcription Factor Family AT4G12020 29.000 1.30e-74 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00359 - - gmx:100796191 1382.47