Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00340 ATGAGAGATGCGAAAAAGGGTCGGAATCGGAGCTTCCCGGTGGATCCGAATGTCCCCCGATGGGTTTGTCAGAACTGCCGGAATCCACTTTGCATCGTCGGCGTCGATTCTTATGCCGACAAGTTCTTCAACGACCCTTCTCGCTCTGGGATGCAAGGGTCTTCCATTCATGGTGCTAGCAGTGTGATGAGTACAACTAAAATGGACAATTCATATGTTGTGTTGCCAAAGCAAAGACCTCAGACACAAGGGGTTCCTCCTCGGCCTCGTGGCGATACTGCCCAGCCTGGAAAGACAATGGAAGAGTCGTTTGTGGTTGTGTACAAGTCAGAATCTGCATCTGATGGAGGCGGGGGAAACTCATCGTCCCCGGGGGTTGACCCTGGTGGTCATTTGCCACCACATAACTCTGGATTCAATTCAACTATTACTGTCCTGACTCGAGCATTTGAGATTGCCACAACACAGACACAGGTTGAACAGCCTCTATGCCTTGACTGCATGCGAGTTTTGTCTGATAAGCTCGATAAAGAGGTTGAAGATGTAAATAGGGACATTGAAGCATATGAAGCCTGTCTAAAACGCTTGGAGGGGGAGGCCAAAGATGTCCTCAGCAAAGCTGATTTTCTTAAGGAGAAATCGAAGattgaagaagaagaaagaagactaaaagcggcaattaaagaaacagagagacagaatgctgaagTAAATGCTGAAATGAAGGAACTCGATTTAAAATCAAGCCGCTTCAAAGAATTGGAGGAGCGGTATTGGCATGAGTTCAATAATTTTCAGTTTCAATTAATTTCGCATCAGGAGGAGAGAGATGCAATTTTGGCCAAGATTGAAGTTTCACAAGCACATTTAGAATTGTTGAAGAAAACAAATGTGCTCAATGACGCCTTTCCGATTTCTCATGATGGAGAGTTTGGAACAATTAACAATTTTCGGCTTGGTAGACTTCCCAAAATTCCAGTAGAATGGGATGAAATAAACGCTGCCTGGGGCCAAGCTTGCCTTCTTCTTCATACAATGTGCCAGTATTTCCGACCAAAGTTCCAATATCGAATAAAAATAATTCCCATGGGTAGCTACCCTCGTATCACAGACAGCAACAACAGTACTTATGAGCTGTTTGGTCCAGTCAACTTGTTCTGGAGTACTCGCTATGACAAGGCAATGACGTTGTTTTTAGCATGCCTCAAGGATTTTGCAGAATTTGCCAATTCTAAGGATCAAGAGAATAACATACCACCTGAGAAATGTTTCAAGCTACCTTATAAGATTGAGAACGACAAAGTGGAAAACTATTCCATCACCCAAAGCTTCAATAAGCAAGAAAATTGGACAAAAGCACTCAAGTACACACTCTGCAATTTGAAATGGGCTCTCTATTGGTTTGTTGGGAATACAAACTTCCAACCTCTTTCAGCAATGGTATCTTCACATGCTGAAGTTCCAGCTGTAGGATCTTTGTACCCAAAGCGCGATGCTGAAGCTCTTCGACTTGCTTTCAAAGGATGGGGTGCTGATGACAAGACCATCATAGCAATATTGGGTCATAGAAATGTTTATCAAAGGCAACAAATTAGAAAAGCTTATGAAGAACTTTTTCAAGAGGATCTCATCAAACGTCTTGAGTCAGAAATTTCCGGTGACTTTGAGAGAGCTGTGTACCGTTGGATGTTGGAGCCTGCAGACCGTGATGCTGTTTTGATCAATGTAGCAGTTAGGAATGGCAGCAAAGACTATCATGTTGTTGCTGAAATTGCTTCTGTGCTATCAGCTGAAGAGCTCTTAGCAGTGAGGCGCGCCTATCATAACCGCTACAAGCGTTCCATCGAAGAAGATGTGGCCGCTCACACCACTGGTCATCTTCGTCAGCTTTTGGTTGGATTGGTGAGCTCATTTAGGTATGAGGGAGATGAAATCAATGCAAAATTAGCACAAAATGAAGCTAATATTATTCATGAAAGTGTCAAGGAAAAGAAAGGCAACAATGAAGAAGAAGTCATTAGGATTCTCACTACAAGGAGCAAGACTCAACTTGTGGCAACTTTCAATCGCTATAGAGATGAACATGGAACATCCATTAGTAAGAAATTGTTGGATCAAACATCTGATGACTTCCACAAGGCATTGCACACAGTTATCCGTTGCATCAATGACCATACAAAGTACTATGAGAAGGTTCTGCGCAATGCAATCAAAAAATTTGGAACAGATGAGGATGGACTCAACCGTGTGATTGTCACAAGGGCTGAGAAGGATTTAAGGGATATCAAAGAGCTCTACTACAAGAGAAATAGTGTTCATCTTGAAGATGCAGTCTCCAAGGAAATCTCAGGAGACTACAAGAAGTTCATCCTCACTCTTTTGGGAAAACAAGACTAA 2397 0.4176 MRDAKKGRNRSFPVDPNVPRWVCQNCRNPLCIVGVDSYADKFFNDPSRSGMQGSSIHGASSVMSTTKMDNSYVVLPKQRPQTQGVPPRPRGDTAQPGKTMEESFVVVYKSESASDGGGGNSSSPGVDPGGHLPPHNSGFNSTITVLTRAFEIATTQTQVEQPLCLDCMRVLSDKLDKEVEDVNRDIEAYEACLKRLEGEAKDVLSKADFLKEKSKIEEEERRLKAAIKETERQNAEVNAEMKELDLKSSRFKELEERYWHEFNNFQFQLISHQEERDAILAKIEVSQAHLELLKKTNVLNDAFPISHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFQYRIKIIPMGSYPRITDSNNSTYELFGPVNLFWSTRYDKAMTLFLACLKDFAEFANSKDQENNIPPEKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALYWFVGNTNFQPLSAMVSSHAEVPAVGSLYPKRDAEALRLAFKGWGADDKTIIAILGHRNVYQRQQIRKAYEELFQEDLIKRLESEISGDFERAVYRWMLEPADRDAVLINVAVRNGSKDYHVVAEIASVLSAEELLAVRRAYHNRYKRSIEEDVAAHTTGHLRQLLVGLVSSFRYEGDEINAKLAQNEANIIHESVKEKKGNNEEEVIRILTTRSKTQLVATFNRYRDEHGTSISKKLLDQTSDDFHKALHTVIRCINDHTKYYEKVLRNAIKKFGTDEDGLNRVIVTRAEKDLRDIKELYYKRNSVHLEDAVSKEISGDYKKFILTLLGKQD 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00340 798 ProSitePatterns Annexin repeat signature. 741 793 IPR018252 GO:0005509|GO:0005544
Car05g00340 798 Gene3D Annexin 480 564 IPR037104 GO:0005509|GO:0005544
Car05g00340 798 Pfam Apg6 coiled-coil region 162 290 IPR041691 -
Car05g00340 798 PANTHER ANNEXIN 494 798 - -
Car05g00340 798 Coils Coil 172 257 - -
Car05g00340 798 PANTHER ANNEXIN 494 798 - -
Car05g00340 798 MobiDBLite consensus disorder prediction 111 139 - -
Car05g00340 798 MobiDBLite consensus disorder prediction 77 99 - -
Car05g00340 798 Gene3D - 204 296 - -
Car05g00340 798 Gene3D Annexin 565 636 IPR037104 GO:0005509|GO:0005544
Car05g00340 798 SUPERFAMILY Annexin 495 798 IPR037104 GO:0005509|GO:0005544
Car05g00340 798 ProSiteProfiles Annexin repeat profile. 493 564 IPR018502 GO:0005509|GO:0005544
Car05g00340 798 Pfam Annexin 731 793 IPR018502 GO:0005509|GO:0005544
Car05g00340 798 Pfam Annexin 497 559 IPR018502 GO:0005509|GO:0005544
Car05g00340 798 Pfam Annexin 571 634 IPR018502 GO:0005509|GO:0005544
Car05g00340 798 Pfam Annexin 654 717 IPR018502 GO:0005509|GO:0005544
Car05g00340 798 Gene3D Annexin 648 723 IPR037104 GO:0005509|GO:0005544
Car05g00340 798 ProSiteProfiles Annexin repeat profile. 565 636 IPR018502 GO:0005509|GO:0005544
Car05g00340 798 Pfam Apg6 BARA domain 293 468 IPR040455 -
Car05g00340 798 PRINTS Annexin family signature 737 757 IPR001464 GO:0005509|GO:0005544
Car05g00340 798 PRINTS Annexin family signature 507 529 IPR001464 GO:0005509|GO:0005544
Car05g00340 798 PRINTS Annexin family signature 547 563 IPR001464 GO:0005509|GO:0005544
Car05g00340 798 PRINTS Annexin family signature 657 683 IPR001464 GO:0005509|GO:0005544
Car05g00340 798 PRINTS Annexin family signature 781 794 IPR001464 GO:0005509|GO:0005544
Car05g00340 798 SMART annex3 582 634 IPR018502 GO:0005509|GO:0005544
Car05g00340 798 SMART annex3 666 718 IPR018502 GO:0005509|GO:0005544
Car05g00340 798 SMART annex3 510 562 IPR018502 GO:0005509|GO:0005544
Car05g00340 798 SMART annex3 741 793 IPR018502 GO:0005509|GO:0005544
Car05g00340 798 Gene3D Autophagy protein 6/Beclin 1 297 473 IPR038274 -
Car05g00340 798 PRINTS Plant annexin signature 643 663 IPR009118 -
Car05g00340 798 PRINTS Plant annexin signature 601 615 IPR009118 -
Car05g00340 798 PRINTS Plant annexin signature 709 727 IPR009118 -
Car05g00340 798 Gene3D Annexin 726 796 IPR037104 GO:0005509|GO:0005544
Car05g00340 798 ProSiteProfiles Annexin repeat profile. 648 720 IPR018502 GO:0005509|GO:0005544
Car05g00340 798 ProSiteProfiles Annexin repeat profile. 724 795 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00340 Car-Chr5 16921864 16945884 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00340 K08334 - gmx:732646 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00340 05 16921864 16945884 Car05g00340 05 16921864 16945884 ECH
Car05g00340 05 16921864 16945884 Car07g02559 07 48844715 48848240 PCT