Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00297 ATGTCCACCAACGATTCCCTCTCAGACCACAAGCTCTGCGGTTTCCTCTATGCGGTTCTCATACTCAAACCTTCGCATCCTCGCGAAAACGACACTCGTTTCAACGACCGCTGTGAGATCTTCAACGACGGCAAGACTTTCGGTTTTCGGACTCAAAACGGCGTCGTTTTAAGCCCTATCGTTGATTCGGCAGAATGCGATAATTCGAAGGGGAAAAAGGTGAAGAAGGTTGGTATGGTGAACGGGAGCTTCAGCGTTGTTCATCAGCTTCACGCTTTGGTTGTTCGTAAATGCTTGAATATCGATGCTCGTGTTGTTTGTGTTGTGGAAGAAACATCTAGGGTTAGGGTTGTGGTTCTCGTTGATGTTTATCTTCCGATTCAGGTTTGGACTGGATGGCAGTTCCCAAAATCTGGTTCCGTTGCTGGCGCTGTTTTTCGCCATTTGAGCTGTGATTGGGATGAGAGAAGTTCAATGCTTTCTGATCCAGACTACTGTAGGAAGATTCATGGAGAAAATAAGAGCATTTGGAACCTTTCTGGTTGTCATGTACTTGGTTGCAAGCTCCATTCGCCTGTGAGCGGTTCTTCAAAGGAAAGGCTATTTGAACTTCATGAAATTTTTAAGACCGTACCTTGTGTAGGAAAAAAGCAGAAGTTTATTATTTCCAAGATAATACCTATGGACAACACTTGCAGATCTGGGATTTGGGAGATCTCTGATGATATTTTAACTAAAATTCTAGCTTCCCTTGGCCCAGTGGACCTCACTAGTGTTTCTGCAACTTGTCGTCATCTAAGATCCTTGGCTGCTTCAACGCAAGGTACATTGGCGGACCCACCAGAGGGGTCACAAGTAGTTTGGTGTCAACATAATGGTACCCAAAAATGTGGCTATTATGAGATTAGTGGTAATTGTACTGTCACGGGTAAGAGGGATGTTTGCCAAGATACAGGTAGAGATAATGAGAACCACGGCTACTCCTCTAAAAGAGCCAAATTGTCAAATCCTGGTCATAACATTTCTAAACCCCATGATTCATGTTCTGTTGGAGAAAAAAAATCACCTTCAGATGCTTGCTTTGAGGAATATACGCCTGCTAGTCGGTGCACTAGAAGCTTGAACCGCATAAAGAAAAATCTATATTTCACTCATGACGATGAAGCTATGATTTCCAAAGAAAGAAGATTTGGTAAAAGACCAATTAAAACAAAACATGCATCAGATGCTGCATCCCTTGTGTCTCAAAACGAGCTAGTTGATACTTCATACGGATGTGGACAGAGTTACAAGGGGCATGGGAAGCGTAAAGTTGATAGTTTGGAATACAGTGATACGTGGATCCAGTGTGATGCTTGTCACAAATGGCGAAAGCTGGCAGACAATAGTATGGCTAATTCCAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTATATCAGAGTTGTAGTGTCGTGGAACAGTATATTCAGAATAGCTGTAAGATAACTCACTTACCAGGATTTCACTTGAAAGGAACTCCTGGAGGTGAGAAACAAAACGTTTCATTTTTCACTAGTGTGCTTAAGGAGCACTACTCGTTGATAAATTCTCAGACAAGGAAGGCCCTGACTTGGTTGGCCAAGATTTCAACGGACAAGCTTGAGGTAATGGAAACGTATGGCATACGCGGTCCTATTTTAAACAATTGCACTTTGTCTAATGGGACATCGAATCCATACCACAAAATATTTCAAGCATTTGGCCTCATAAAGAGTGTAGAGAAAGGTGTATGCAGGTGGTTCTACCCACAAAGTCTTAACAATTTGACTTTTGATGTTGCTGCCCTTGGCTTGGCTCTCTGTGAGCCATTAGATTTTGTTAGGTTATACTTGTCAAGAGCAACCCTGGTAGTTGTTCCAGCAAACTTGGTCGATCATTGGAAAACACAAATAGAAAAGCATGTTAGGCCTGGTCAATTGCGGGTTTATGTATGGAACAATCATCGGAAACCATCTGCACACTCTCTTGCTTGGGATTATGATGTTGTCATCACTACATTTAGCCGTTTGAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGCTCTAACGCAAGTGCATTGGTTTAGGATCATTTTAGATGAAGGGCATACTCTTGGCTCAAGCCTGAGCTTAACAAACAAGTTGCAAATGGCTATTTCATTGGTTGCTTCAAATCGATGGATACTAACTGGAACTCCGACACCTAATACTCCTAACAGCCAACTTTCGCATTTACAACCGTTGTTGAAGTTCCTTCATGAAGAAACTTATGGACTGAATCACAAATCATGGGAGGCTGGTGTGCTTAGGCCATTTGAGGCTGAGATGGACGAAGGTCGGTCTCGTCTGTTGCATTTACTTCAGAAATGCATGATTAGTGCAAGAAAGGTGGATTTGCAAAGTATTCCACCATGCATCAAGAAAGTTGTTTTAATTGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTACTCACTGTTAGGCGTAATATATTGATGGCTGATTGGAATGACCCTTCACATGTGGAGAGTCTACTGAACCCGAAACAGTGGAAATTTCGTAGTGAAACTATAAAAAATGTCAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAACAATGGATATGTTAGTACAAAATGGTCTAGATTTTACTTCAGGGGAGTATTCCTCCATAAGATATAGTCTCCTGTATGGTGGTCACTGTGTCAGGTGCAAGGAGTGGTGCCGCCTTCCTCTCATTGCACCATGTCGACATATGTTGTGCCTTGGTTGTGTTTCCATAGATAAGACAAAGTGTACATATCCTGGCTGTGATAACTTATATGAGATGCAGAGTCCTGATACAATGGCACGGCCAGAAAATCCTAACCCAAAGTGGTCTGTACCCAAAGATCTTATTGAGCTACAGCCTTCATATAAGCAGGCATGCTTTTTAATTAAGAAATCAGATAATTGGGATCCTGATTGGCAATCAACATCAAGTAGTAAAGTTGCTTACCTTGTCCAGAGGTTGAAATCTTTGCAAGGAACCAATGGGGAGATGAGTTCATATACAGAAAATAGCAATAGTGAGATGCATATTGAGAATAGTTTTCCTTTGCATACAAGACACGCAGAATCATCATTCCAGGAATGTTCTGTGAGTAGCAATAGCACCAATGCGGTCCCCGAAAAAGTTTTGATATTTTCTCAGTTTCTTCAGCATATTCATGTCATTGAACAGCAGTTGGCTGTTAATGGTATCAAATATACTGGAATGTATAACCCAATGCATTCTAGCAACAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCTAGTTGTATGGCACTTCTGATGGATGGGAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACATGTGTTTTTAATGGAGCCAATTTGGGACAAAAGTATGGAGGAGCAAGTAATTAGTCGGGCCCATCGCATGGGTGCTTCTCGTCCTATTCACGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGATAGAATTTTTACAGGATGCTGATAAATGTAGAAGATTTCATAATAAAGATGTTGCTAAATCTGAAGATGAAACTCTAGAAGGTGTTTTATTTATCAACTTACAGACTAAATGCTTTAGGCAAGTCCAGTGGATGTCCTGCAAGAAGATTGCATACTCATATGATTTTGCATTTTGGATATACAATCTTACTGGTGCTCTTTTAGTGTTATGA 3792 0.4138 MSTNDSLSDHKLCGFLYAVLILKPSHPRENDTRFNDRCEIFNDGKTFGFRTQNGVVLSPIVDSAECDNSKGKKVKKVGMVNGSFSVVHQLHALVVRKCLNIDARVVCVVEETSRVRVVVLVDVYLPIQVWTGWQFPKSGSVAGAVFRHLSCDWDERSSMLSDPDYCRKIHGENKSIWNLSGCHVLGCKLHSPVSGSSKERLFELHEIFKTVPCVGKKQKFIISKIIPMDNTCRSGIWEISDDILTKILASLGPVDLTSVSATCRHLRSLAASTQGTLADPPEGSQVVWCQHNGTQKCGYYEISGNCTVTGKRDVCQDTGRDNENHGYSSKRAKLSNPGHNISKPHDSCSVGEKKSPSDACFEEYTPASRCTRSLNRIKKNLYFTHDDEAMISKERRFGKRPIKTKHASDAASLVSQNELVDTSYGCGQSYKGHGKRKVDSLEYSDTWIQCDACHKWRKLADNSMANSSAAWFCSMNTDPLYQSCSVVEQYIQNSCKITHLPGFHLKGTPGGEKQNVSFFTSVLKEHYSLINSQTRKALTWLAKISTDKLEVMETYGIRGPILNNCTLSNGTSNPYHKIFQAFGLIKSVEKGVCRWFYPQSLNNLTFDVAALGLALCEPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWNNHRKPSAHSLAWDYDVVITTFSRLSAEWGPRKRSALTQVHWFRIILDEGHTLGSSLSLTNKLQMAISLVASNRWILTGTPTPNTPNSQLSHLQPLLKFLHEETYGLNHKSWEAGVLRPFEAEMDEGRSRLLHLLQKCMISARKVDLQSIPPCIKKVVLIDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSETIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQNGLDFTSGEYSSIRYSLLYGGHCVRCKEWCRLPLIAPCRHMLCLGCVSIDKTKCTYPGCDNLYEMQSPDTMARPENPNPKWSVPKDLIELQPSYKQACFLIKKSDNWDPDWQSTSSSKVAYLVQRLKSLQGTNGEMSSYTENSNSEMHIENSFPLHTRHAESSFQECSVSSNSTNAVPEKVLIFSQFLQHIHVIEQQLAVNGIKYTGMYNPMHSSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDKSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMIEFLQDADKCRRFHNKDVAKSEDETLEGVLFINLQTKCFRQVQWMSCKKIAYSYDFAFWIYNLTGALLVL 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00297 1263 MobiDBLite consensus disorder prediction 320 350 - -
Car05g00297 1263 Pfam CW-type Zinc Finger 446 489 IPR011124 GO:0008270
Car05g00297 1263 Gene3D - 613 803 IPR038718 -
Car05g00297 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 799 IPR027417 -
Car05g00297 1263 CDD DEXDc_SHPRH-like 623 800 - -
Car05g00297 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 701 1199 IPR027417 -
Car05g00297 1263 CDD SF2_C_SNF 1078 1183 - -
Car05g00297 1263 Pfam Helicase conserved C-terminal domain 1074 1173 IPR001650 -
Car05g00297 1263 Gene3D - 440 494 - -
Car05g00297 1263 SMART ultradead3 589 770 IPR014001 -
Car05g00297 1263 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 759 IPR014001 -
Car05g00297 1263 ProSitePatterns Zinc finger RING-type signature. 937 946 IPR017907 -
Car05g00297 1263 Pfam SNF2-related domain 624 857 IPR000330 GO:0005524|GO:0140658
Car05g00297 1263 SUPERFAMILY F-box domain 230 272 IPR036047 GO:0005515
Car05g00297 1263 Pfam F-box domain 239 270 IPR001810 GO:0005515
Car05g00297 1263 PANTHER OS01G0952200 PROTEIN 477 1217 - -
Car05g00297 1263 PANTHER OS01G0952200 PROTEIN 35 272 - -
Car05g00297 1263 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1067 1212 IPR001650 -
Car05g00297 1263 MobiDBLite consensus disorder prediction 329 343 - -
Car05g00297 1263 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 477 1217 - -
Car05g00297 1263 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 35 272 - -
Car05g00297 1263 SMART helicmild6 1091 1173 IPR001650 -
Car05g00297 1263 Gene3D - 985 1230 IPR027417 -
Car05g00297 1263 ProSiteProfiles Zinc finger CW-type profile. 441 492 IPR011124 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00297 629 1193 RAD5 or RAD16-like Gene Family AT5G22750 25.620 3.74e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car05g00297 SNF2_N 2.1e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00297 - - gmx:100803102 1545.41