Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00293 ATGGTTGTTCCTTGTCCTGGTTTGAATTGCAAGGGTTTGTTGGAGCTTGATGTTTGCAGATGTTTGCTTCCAAAAGAAGTAATTGATAGGTGGGATGATGCATTGTGTGGTGGAGAAGAAATTAGGGAATCTGAGTGTCCTTTTTGTCGTAGATTGTTTTGTGCTAGGTGTCCTGTTCCTTGGCATCCTAGTGTTGGTTGTGAGGAATTTCAGAAACTTAATGTGGATGAGAGAGGGATTCAAGATCTTCTTGCTAGAGAGCTTGCTAATAAGAAAAAGTGGAAAAGGTGTCCCCAATGCAAATTTTATGTTGAAAAAATTAAAGGTTGTTTGCATATCACATGTAGTGATGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCCCAAAGCTGCTCCAAAATTGGCTTCGTTCCAAGATGTAGAATCCATGTTGAACCACCATTTGGCAGGGCTACTAGGACTTGGGTCTCTTTCTTGGGCGGGGAATCAAGTACATGTATCTTTACCAATTAACCAATTTCTAAATGTTGGAGTAGATCCCAAAGAGATCCCATTTCCTCATGAATTTATCTTGAATCGAGATCTTTTGGCTCAACTTTATCCAAGTTTTGCCGAGGGAGCAACCCCATTTTTTACCTTGAATTGGTCAAAATACACGGACTTTCTTacttatcgtggatga 687 0.3916 MVVPCPGLNCKGLLELDVCRCLLPKEVIDRWDDALCGGEEIRESECPFCRRLFCARCPVPWHPSVGCEEFQKLNVDERGIQDLLARELANKKKWKRCPQCKFYVEKIKGCLHITCSDAALMLFAGWFHYPKAAPKLASFQDVESMLNHHLAGLLGLGSLSWAGNQVHVSLPINQFLNVGVDPKEIPFPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYTDFLTYRG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00293 228 PANTHER OUTER MEMBRANE PROTEIN, OMPA-RELATED 118 228 - -
Car05g00293 228 Pfam Photosystem I psaA/psaB protein 118 228 IPR001280 GO:0009579|GO:0015979|GO:0016021
Car05g00293 228 ProSiteProfiles TRIAD supradomain profile. 1 162 IPR044066 -
Car05g00293 228 SUPERFAMILY RING/U-box 78 115 - -
Car05g00293 228 PRINTS Plant photosystem I psaA and psaB protein signature 107 131 IPR001280 GO:0009579|GO:0015979|GO:0016021
Car05g00293 228 PRINTS Plant photosystem I psaA and psaB protein signature 146 170 IPR001280 GO:0009579|GO:0015979|GO:0016021
Car05g00293 228 SUPERFAMILY Photosystem I subunits PsaA/PsaB 117 228 IPR036408 -
Car05g00293 228 PANTHER PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 118 228 IPR006243 GO:0015979|GO:0016021|GO:0046872
Car05g00293 228 Gene3D Photosystem I PsaA/PsaB 104 228 IPR036408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00293 Car-Chr5 14435230 14437903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00293 38 115 C3H Transcription Factor Family AT2G19610 34.615 1.59e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00293 K02689 - sly:3950484 199.519