Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00289 ATGGTGATATCTTCAGAGGCACAGTTTCATGTTTTGGCGGTTGATGATAGTATTATTGATAGAATATTGATTGAGAGGCTCCTCAAAACCTCTTCATTTCATGTTACTGTAGTGGATTCTGGTAGCAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGATGAAGTGAGGAATGAAAAGCCTCTCACTATTGCTTCAGAAACTCATCAGGTTGTAGAAGTTAATTTGATCATAACTGATTATTGCATGCCAGGAATGACAGGCTATGATCTGCTTAGAAAGATCAAGGAATCTAATTCTCTTAAAGACATTCCAGTTGTGATTATGTCATCAGAAAATGTTCCATCAAGGATCAACAGATGCTTAGAAGAAGGAGCTGAAGAATTTTTTCTGAAACCAGTTCAACAATCAGATTTAGGTAAGGAAATTTCTTACGTCTTTCTATTTTTTCATACAATACCTACAAACTGTGGATTCTGTTTCTTCATTCTTCTTAATTTCCAAACCAGGATGGAATCCCTTGCTGTTACAATCTTGGAAAAATTGAGCTCTGCAGTTTATAAAGAGGTTGGAATCATTTGGAATCTCAAAGAGGATATCGAAAGAATGAAGAACACGATCTTCGCGATAAAAGTTGTGCTCCTCGATGCAGAGGCAAAGGCCAATAATCATCAAGTTAGTAATTGGTTGGAGGAGTTGAAAGATGTACTTTATGATGCAGATGATTTAATAGATGATTTTTCCATTAAAGTTTTGAAAAGAAAAGTGATGGCTGGAAACAACATAGTAAGACAAGTACAAATTTTCTTCTCAAAATCAATCAAAATTTCCTATGGCCTTAAATTGGGCCATAAAATGAAAGCAATCCAGAAGCGGTTAGACGACATTGCTAAAACTAAGCATGCTTTGCAACTGATCAATCAACCTATGGAGAATCCAATTGTGTATAGGGAACAAAGACAAACTTACTCTTTTGTGAGTAAAGATGAAATTAttggaagagagaaggaaaaaaaatgtattaaaagttatctactagacatcaatgcaaaagataatgtttctatagttcccatagttgggattggaggattaggtaagaccgcacttactcaactagtttacaatgataatgatgttcagaggtattttgagctaaaaatgtgggtgtatgtctctgatgattttgatataagaaaaataactcaggagatcgttggggatgacaagaatagtcagatggagaaagtgcaacaagaacttagaaataaaattgaagggaagaagtttttactcgtgttggatgacatgtggaatgaggatcgcgagttgtggcttaaattgaagagcttgttcatggaaggaggaaaaggtagcatgatagttgttacaacccgtagtcagacagtggcgaaaataatgggcacacatccacctcttttgttaaaaggtttggattcgcaaaaatcccaagagctattctctcgcgtagctttcggtgggttaaaagaacaaaatgatttagagttgttagctataggaaaggacattgttaagaaatgtgctggaattccccttgccataagaactattggcagccttttgttttctcgaaatttgggaaggagtgattggttatatttcaaggatgttgagttttcaaaaatagatcaacacaaggacaaaatctttgcaatccttaaattgagttatgatcatcttccttcatttcttaaaaaatgttttgcttattgttcattgtttccaaaaggttttgtacttgagaaaaaaacacttattcaattatggatagctgaggggttcattcaaccatcaaatgatattagatgtgtagaagatgttggtcatgagtacttcatgagtttgctgtccatgtccttctttcaagatgttgctatagacgattgtggtggcttaagtacttgtaaaatgcatgaccttatgcatgacctagcaCAGCTAATGGCCGGGAATGAATATGTTGTTGTTGAAGGAGAAGTAAACATAGGAAACAGAACGCGTTATTTGTCATTTCGTAGTGCATTAGAGTCAGCACCAACATCACCATCTTCCTTCCAGTTAAGGACATTTCATTTGGTTGGTCCACAAATGAATGCAAGCAATTATTTGGGTCAGTCATATGTTCTTTCCTTTTCCAAACTAAAGTTCTTACGTGTGTTGACACTCTGTGGGTTGGATATTTTAGAAATCCCAAATAGTattgaacagatgaagcatttaagatatattgatctgtcacagaatcctatacttaaatatcttccaccgggcattactagcctacataacttgcaaactctaaaactttctgaatgttcgcagctcagaatattgccagaagatctcaataaaactctcagacatcttgagttgaatggttgtgagagattgacatttatgccgcaggggttaggacaattgactaatcttcaaacactaacactttttgtattgaacaatagaagtacaagtgtaaatgagttgagtgtgctaaacaaccttagagggagattagaaataaaagGGTTGGATTTCCTGCGAAATAAGAATGCAGAGATTGAATCTGCAAAAGTACTTCTTGAGAAGCGACACCTTCAACAATTGGAATTGCGGTGGGCGTATTATGTGGATTTTCATCCGTGGTCATTACCAGCAAAAAGGGCCGAAGAAGACAACAAAAATTGGTTGGAAGATGAGATGATTTTACAAGGCCTCCAACCACACCACTCACTTCAAAAACTTGTTATAGATGGATTTTGCGGCAAAAGGTTACCAGATTGGATATGGAGTCTGTCATCGCTCTTGACTCTTGAGTTCCACAATTGCAATGGTTTGACATCACTACCAGATGCAATATGTAACCTTGTATCTTTACAGAAACTTTGCATTTATAACTGCTTATTATTGGAGGAAAGATGTGCAAGACGATATGGTCAAGATTGGCCGAAAATCTCGCTCATTCGAGAAGTTGAGATCCTGCCTATGAGCCCATCATTACTCAAGTATTTTACTTGA 3054 0.2132 MVISSEAQFHVLAVDDSIIDRILIERLLKTSSFHVTVVDSGSKALKFLGLVEDEVRNEKPLTIASETHQVVEVNLIITDYCMPGMTGYDLLRKIKESNSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQSDLGKEISYVFLFFHTIPTNCGFCFFILLNFQTRMESLAVTILEKLSSAVYKEVGIIWNLKEDIERMKNTIFAIKVVLLDAEAKANNHQVSNWLEELKDVLYDADDLIDDFSIKVLKRKVMAGNNIVRQVQIFFSKSIKISYGLKLGHKMKAIQKRLDDIAKTKHALQLINQPMENPIVYREQRQTYSFVSKDEIIGREKEKKCIKSYLLDINAKDNVSIVPIVGIGGLGKTALTQLVYNDNDVQRYFELKMWVYVSDDFDIRKITQEIVGDDKNSQMEKVQQELRNKIEGKKFLLVLDDMWNEDRELWLKLKSLFMEGGKGSMIVVTTRSQTVAKIMGTHPPLLLKGLDSQKSQELFSRVAFGGLKEQNDLELLAIGKDIVKKCAGIPLAIRTIGSLLFSRNLGRSDWLYFKDVEFSKIDQHKDKIFAILKLSYDHLPSFLKKCFAYCSLFPKGFVLEKKTLIQLWIAEGFIQPSNDIRCVEDVGHEYFMSLLSMSFFQDVAIDDCGGLSTCKMHDLMHDLAQLMAGNEYVVVEGEVNIGNRTRYLSFRSALESAPTSPSSFQLRTFHLVGPQMNASNYLGQSYVLSFSKLKFLRVLTLCGLDILEIPNSIEQMKHLRYIDLSQNPILKYLPPGITSLHNLQTLKLSECSQLRILPEDLNKTLRHLELNGCERLTFMPQGLGQLTNLQTLTLFVLNNRSTSVNELSVLNNLRGRLEIKGLDFLRNKNAEIESAKVLLEKRHLQQLELRWAYYVDFHPWSLPAKRAEEDNKNWLEDEMILQGLQPHHSLQKLVIDGFCGKRLPDWIWSLSSLLTLEFHNCNGLTSLPDAICNLVSLQKLCIYNCLLLEERCARRYGQDWPKISLIREVEILPMSPSLLKYFT 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00289 1017 ProSiteProfiles Response regulatory domain profile. 10 146 IPR001789 GO:0000160
Car05g00289 1017 Gene3D - 483 569 IPR042197 -
Car05g00289 1017 PRINTS Disease resistance protein signature 423 437 - -
Car05g00289 1017 PRINTS Disease resistance protein signature 520 534 - -
Car05g00289 1017 PRINTS Disease resistance protein signature 772 788 - -
Car05g00289 1017 PRINTS Disease resistance protein signature 355 370 - -
Car05g00289 1017 Pfam Rx N-terminal domain 177 260 IPR041118 -
Car05g00289 1017 Gene3D - 10 147 - -
Car05g00289 1017 Pfam Response regulator receiver domain 11 142 IPR001789 GO:0000160
Car05g00289 1017 Gene3D - 314 476 IPR027417 -
Car05g00289 1017 SMART REC_2 9 142 IPR001789 GO:0000160
Car05g00289 1017 Gene3D - 570 660 IPR036388 -
Car05g00289 1017 PANTHER DISEASE RESISTANCE PROTEIN RP 179 857 IPR044974 GO:0006952
Car05g00289 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 584 IPR027417 -
Car05g00289 1017 Pfam NB-ARC domain 338 571 IPR002182 GO:0043531
Car05g00289 1017 PANTHER OS10G0130600 PROTEIN 179 857 - -
Car05g00289 1017 Coils Coil 856 876 - -
Car05g00289 1017 CDD REC_typeA_ARR 11 140 - -
Car05g00289 1017 CDD RX-CC_like 174 297 IPR038005 -
Car05g00289 1017 SUPERFAMILY L domain-like 649 983 - -
Car05g00289 1017 Gene3D - 175 286 - -
Car05g00289 1017 Gene3D Ribonuclease Inhibitor 700 991 IPR032675 -
Car05g00289 1017 SUPERFAMILY CheY-like 9 146 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00289 Car-Chr5 14210881 14220338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00289 1 140 Response Regulator Gene Family AT3G57040 70.213 2.38e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car05g00289 NB-ARC 2.9e-40 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00289 - - mtr:MTR_3g015500 1248.42