Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00283 ATGAGCATGTTAGGCCTTAGAGACCTACTTCTCATAGCTCCAACACCTTCTTCCATTcatcatcatcaacaacaacaaaatcaaaaccaacCCATCTCAACAGATCAAAATTCAAACCACCCTTTACCTTCACCATCATCACTAAGTGTTGGTTTTGGTATTTTCCCACTCCTCACTACCACACCTTGCATTCCACAATCTCAAAACAATGAATCTCAAGAAAATCCAAACAACAACAATTTTTGGAATCTTAGGATGTATCAAGAACCAAAAAAAGGTGTGAGTGTAATCAATGTTGATGATGAAAAAATTAATAATAACAAGATGGTTGTGATGGAAAGTGAAGAAAATGGTGTTTATGGTTCTGAGTATAGAGTGTGTGAAGATTGTGGTAATAGAGCTAAGAAAGATTGTGTTTTTAGAAGATGTAGAACTTGTTGTAAGGGACGTGGATATGATTGTTGTACTCATTTGAAGAGTACTTGGATTCCTTCGACTCGTCGCCGAGAGCGCGAGATCGAggtggtcggtggtggtggcgatggtgttgCTAAGAGACTAAAAAGTTTAATTGGGTCATCACAAAATGTTTCTGCAAATTCTCATAGTTCAAATTCTAATGCTACTACACCTAAGAGCTTTGCTACTAGCTCTTGTCACCAAGATGCTGGTTTCAAAGAGACATTACCAGGTCATGTTCAAGCACCAGCTGTATTTAAGTGTCACAGAGTGACTGCTATTGGAAATGGTGAAGATGAATTTGCTTACTTGGCAACAGTTCATATTAGTGGCCATGTGTTTAAAGGGTTTCTCTATGATCATGGTGTTGATGGCAAAAACGCAATGCATTGTGTTTCAGAATTGCAATTGGGAAATAATTGTAGTGGAAAGAATGGAGAATGTTCTTCTGCAATTGGTGTTCCAACCAATATTAATACTTACCCTGCTTCTGCTACTTGA 960 0.3521 MSMLGLRDLLLIAPTPSSIHHHQQQQNQNQPISTDQNSNHPLPSPSSLSVGFGIFPLLTTTPCIPQSQNNESQENPNNNNFWNLRMYQEPKKGVSVINVDDEKINNNKMVVMESEENGVYGSEYRVCEDCGNRAKKDCVFRRCRTCCKGRGYDCCTHLKSTWIPSTRRREREIEVVGGGGDGVAKRLKSLIGSSQNVSANSHSSNSNATTPKSFATSSCHQDAGFKETLPGHVQAPAVFKCHRVTAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKNAMHCVSELQLGNNCSGKNGECSSAIGVPTNINTYPASAT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00283 319 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 318 IPR007818 GO:0003700|GO:0006355
Car05g00283 319 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 318 - -
Car05g00283 319 MobiDBLite consensus disorder prediction 18 45 - -
Car05g00283 319 Pfam Domain of unknown function (DUF702) 125 277 - -
Car05g00283 319 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 126 168 IPR006510 -
Car05g00283 319 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 229 276 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g00283 Car-Chr5 7062359 7067241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g00283 1 311 C2H2 Transcription Factor Family AT5G12330 40.432 6.23e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Car05g00283 DUF702 3.2e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00283 - - gmx:100806835 399.823